View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_high_16 (Length: 365)

Name: NF19922_high_16
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_high_16
NF19922_high_16
[»] chr4 (13 HSPs)
chr4 (1-355)||(36399658-36400012)
chr4 (1-355)||(36407115-36407467)
chr4 (1-355)||(36435723-36436077)
chr4 (1-355)||(36376225-36376579)
chr4 (1-295)||(36370513-36370814)
chr4 (1-280)||(36412313-36412590)
chr4 (123-355)||(36429270-36429502)
chr4 (120-355)||(36419277-36419512)
chr4 (1-355)||(36389469-36389815)
chr4 (1-107)||(36401201-36401306)
chr4 (297-355)||(36370433-36370491)
chr4 (1-65)||(36429551-36429615)
chr4 (1-76)||(36419577-36419652)
[»] chr2 (4 HSPs)
chr2 (201-289)||(2662500-2662588)
chr2 (7-45)||(2716914-2716952)
chr2 (8-45)||(2723538-2723575)
chr2 (8-45)||(2745368-2745405)
[»] chr8 (7 HSPs)
chr8 (196-256)||(15697360-15697420)
chr8 (196-261)||(15692684-15692749)
chr8 (196-253)||(15799867-15799924)
chr8 (196-253)||(15805399-15805456)
chr8 (220-319)||(23560535-23560634)
chr8 (7-45)||(19357642-19357680)
chr8 (201-253)||(15813254-15813306)
[»] chr3 (1 HSPs)
chr3 (211-339)||(5488910-5489038)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36400012 - 36399658
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36400012 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttc 36399913  T
Q  101 gtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36399912 gtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgag 36399813  T
Q  201 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36399812 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctc 36399713  T
Q  301 gagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  36399712 gagcaatgccacaaataatttcaaaacgcttaccccaatccaatgatgacctttg 36399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36407467 - 36407115
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttc 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  36407467 atatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggttagagtatcataaaaa-tacatatccatctgtatattttc 36407369  T
Q  101 gtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgag 200  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  36407368 gtgat-ataagtgtgtgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgag 36407270  T
Q  201 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctc 300  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36407269 attttgggattcattgcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctc 36407170  T
Q  301 gagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    ||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||    
T  36407169 gagcaatcccacaaatgatttcaaaacgctttacccaatccaatgatgacctttg 36407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36436077 - 36435723
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataat-tt 99  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||| |||||||| || ||||| |||||| ||    
T  36436077 atatcgtccttccattgcatattccggtgacatatatccactgcaattatacaaaatagtta-agtctcatacaaaatacagattcatctctataatctt 36435979  T
Q  100 cgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctga 199  Q
      || ||||||| || ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  36435978 aatggttataagggtatgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctga 36435879  T
Q  200 gattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacct 299  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435878 gattttgggattcattgcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacct 36435779  T
Q  300 cgagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  36435778 cgagcaatgccacaaataatttcaaaacgcttaccccaatccaataatgacctttg 36435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36376579 - 36376225
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataat-tt 99  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||| |||||||| || ||||| |||||| ||    
T  36376579 atatcgtccttccattgcatattccggtgacatatatccactgcaattatacaaaatagtta-agtctcatacaaaatacagattcatctctataatctt 36376481  T
Q  100 cgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctga 199  Q
      || ||||||| || ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  36376480 aatggttataagggtgtgaaacatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctga 36376381  T
Q  200 gattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacct 299  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36376380 gattttgggattcattgcagcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacct 36376281  T
Q  300 cgagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    |||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||    
T  36376280 cgagcaatcccacaaataatttcaaaacgctttccccaatccaatgatgacctttg 36376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 36370814 - 36370513
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattataca-------aaatggtta-gagtatcataaaaaatacatatccatctgt 92  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||||||       |||| |||| |||||||||||||| |||||||||||||||    
T  36370814 atatcgtccttccattgcatattctggtgacatatattcactgcaattatacattatacaaaattgttaagagtatcataaaaa-tacatatccatctgt 36370716  T
Q  93 ataatttcgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccga 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  36370715 ataatttcgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaa 36370616  T
Q  193 aagctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataa 292  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36370615 aatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataa 36370516  T
Q  293 aac 295  Q
    |||    
T  36370515 aac 36370513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36412590 - 36412313
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttc 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  36412590 atatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggttagagtatcataaaaa-tacatatccatctgtatattttc 36412492  T
Q  101 gtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgag 200  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  36412491 gtgat-ataagtgtgtgacacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgag 36412393  T
Q  201 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 280  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412392 attttgggattcattgcagcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 36412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 123 - 355
Target Start/End: Complemental strand, 36429502 - 36429270
Alignment:
Q  123 tactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcagcat 222  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  36429502 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 36429403  T
Q  223 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataatttc 322  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36429402 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttc 36429303  T
Q  323 gaaacgcttaacccaatccaatgatgacctttg 355  Q
     |||||||| |||||||||||||| ||||||||    
T  36429302 aaaacgctttacccaatccaatgacgacctttg 36429270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 120 - 355
Target Start/End: Complemental strand, 36419512 - 36419277
Alignment:
Q  120 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 219  Q
    |||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||    
T  36419512 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattacag 36419413  T
Q  220 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 319  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36419412 catcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagatataatacacctcgagcaatcccacaaataat 36419313  T
Q  320 ttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    ||| |||||| |||||||||||||||||||||||||    
T  36419312 ttcaaaacgcgtaacccaatccaatgatgacctttg 36419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36389815 - 36389469
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatt-t 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |||||||          ||||      ||||| ||||||  |    
T  36389815 atatcgtccttccattgcatattccggtgacatgtatccactgcaattataggaaattgttagag----------aatatggtgacatctatataatcat 36389726  T
Q  100 cgtgattataagtgtttgagacatactatgttccgaccactctttttgttcttgcttggatttcatcttc---tccaaatattctagccataccgaaagc 196  Q
     |||| |||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||   ||||||||||||||||||||| ||| |    
T  36389725 ggtgaatataagggtatgagacatactatgttccaaccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccataccaaaatc 36389626  T
Q  197 tgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaaca 296  Q
    ||||||||| || |||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||     
T  36389625 tgagattttagggttcattgcagcgtcaaggagaacattgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaagatataaaacg 36389526  T
Q  297 cctcgagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    ||||||||||| ||||  |||||||| ||||| ||  ||||||||||||||||||||||    
T  36389525 cctcgagcaatcccac--ataatttcaaaacgtttgccccaatccaatgatgacctttg 36389469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 36401306 - 36401201
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaaatacatatccatctgtataatttc 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  36401306 atatcgtccttccattgcatattctggtgacatatatccactgcaattaaacaaaatggttagagtatcata-aaaatacatatccatctgtatattttc 36401208  T
Q  101 gtgatta 107  Q
    || ||||    
T  36401207 gtaatta 36401201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 36370491 - 36370433
Alignment:
Q  297 cctcgagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 355  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 36370433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36429615 - 36429551
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagag 65  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||| |||||||    
T  36429615 atatcgtccttccattgcatattctggtgacatatatccgctgcaattattcaaaatagttagag 36429551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36419652 - 36419577
Alignment:
Q  1 atatcgtccttccattgcatattcgggtgacatgtatccactgcaattatacaaaatggttagagtatcataaaaa 76  Q
    ||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||| | || || ||||||||||    
T  36419652 atatcgtccttgcattgcatattccggagacatatatccactgcaattatacaaaatagctatagcatcataaaaa 36419577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 2662500 - 2662588
Alignment:
Q  201 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagata 289  Q
    ||||| |||||||||||  |||| |  ||||||||||| |||||||||||||||||||||||| | || |||||||||  |||||||||    
T  2662500 atttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtcttgaatctctatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 2716914 - 2716952
Alignment:
Q  7 tccttccattgcatattcgggtgacatgtatccactgca 45  Q
    |||||||||||||||||| || |||||||||||||||||    
T  2716914 tccttccattgcatattccggagacatgtatccactgca 2716952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2723538 - 2723575
Alignment:
Q  8 ccttccattgcatattcgggtgacatgtatccactgca 45  Q
    ||||||||||||||||| || |||||||||||||||||    
T  2723538 ccttccattgcatattccggagacatgtatccactgca 2723575  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2745368 - 2745405
Alignment:
Q  8 ccttccattgcatattcgggtgacatgtatccactgca 45  Q
    ||||||||||||||||| || |||||||||||||||||    
T  2745368 ccttccattgcatattccggagacatgtatccactgca 2745405  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 15697360 - 15697420
Alignment:
Q  196 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 256  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  15697360 ctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 15692684 - 15692749
Alignment:
Q  196 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaatta 261  Q
    |||| ||||||||||||||||||  ||| |  ||||||||||| ||||| ||||||||||||||||    
T  15692684 ctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 15799867 - 15799924
Alignment:
Q  196 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 253  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15799867 ctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 15805399 - 15805456
Alignment:
Q  196 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 253  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15805399 ctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 23560535 - 23560634
Alignment:
Q  220 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 319  Q
    ||||||| | || |||||| | ||| || ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  23560535 catcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 23560634  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 19357680 - 19357642
Alignment:
Q  7 tccttccattgcatattcgggtgacatgtatccactgca 45  Q
    |||||||||||||||||| || |||||||||||||||||    
T  19357680 tccttccattgcatattctggagacatgtatccactgca 19357642  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 15813254 - 15813306
Alignment:
Q  201 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 253  Q
    ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  15813254 atttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 15813306  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 5488910 - 5489038
Alignment:
Q  211 tcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgcc 310  Q
    |||| ||| ||||||| |||| |||||| | ||| | ||||||||| || ||| | ||  | ||||||||||||||||| || |  ||||||||||| ||    
T  5488910 tcatatcaacatcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattcc 5489009  T
Q  311 acaaataatttcgaaacgcttaacccaat 339  Q
    |  ||||||||| | |||||||| |||||    
T  5489010 atcaataatttccagacgcttaatccaat 5489038  T

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