View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_17 (Length: 363)
Name: NF19922_high_17
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 35355282 - 35355524
Alignment:
| Q |
20 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355282 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
35355381 |
T |
|
| Q |
120 |
tggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355382 |
tggtatctacacttaatgtggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
35355481 |
T |
|
| Q |
220 |
ttaagttacaaagttggattataccaagatttaaaacacaggt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355482 |
ttaagttacaaagttggattataccaagatttaaaacacaggt |
35355524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 35370729 - 35370964
Alignment:
| Q |
20 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| || |||| || |||||| | ||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
35370729 |
accagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaa |
35370828 |
T |
|
| Q |
120 |
tggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
219 |
Q |
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| T |
35370829 |
tggtacctacatttaatgtggccctttacaatgttctctatgcttatgacttggatttgtggacgtgcctttgttttagaaagcaactccttcaagaatc |
35370928 |
T |
|
| Q |
220 |
ttaagttacaaagttggattataccaagatttaaaa |
255 |
Q |
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| ||||| ||| ||||| |||||||||||||||||| |
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| T |
35370929 |
tcaagttgcaatgttggcttataccaagatttaaaa |
35370964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 35381296 - 35381535
Alignment:
| Q |
20 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| || |||||| | |||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
35381296 |
accagatgtggtccacttaacacatttaactacacttagttccatctatcaattacgtttaggctttacttcattagcctccaatcctcaaacatctaaa |
35381395 |
T |
|
| Q |
120 |
tggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
219 |
Q |
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| T |
35381396 |
tggtacctatatttaatgtggccctttacaatgtgctatatgcttatgacatggattagtagacgtgcttttgtcttagaaagcaacactttcaatgatc |
35381495 |
T |
|
| Q |
220 |
ttaagttacaaagttggattataccaagatttaaaacaca |
259 |
Q |
| |
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| ||||||||| ||||| || |||||||||| |||||||| |
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| T |
35381496 |
tcaagttacaatgttggcttttaccaagattcaaaacaca |
35381535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 35355573 - 35355615
Alignment:
| Q |
311 |
ccttggagaatgatttagtgattaccaatgtaatacccctttg |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35355573 |
ccttggagaatgatttagtgattaccaatgtaatatccctttg |
35355615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 19685274 - 19685513
Alignment:
| Q |
20 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| || | |||| | |||||||| ||||||||||||| ||||| ||||||||||| ||| |
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| T |
19685274 |
accagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagggcttgcttccttagcctccaaccctcaaacatcgaaa |
19685373 |
T |
|
| Q |
120 |
tggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
219 |
Q |
| |
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|||||||| | ||||| ||||| |||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||||||| ||| ||||||| |||| |
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| T |
19685374 |
tggtatctcaatttaatgtggccttttacaatgtgctctatgcttttgacttggattagtggaagtgcctttgttttagaaagtaactccttcaaagatc |
19685473 |
T |
|
| Q |
220 |
ttaagttacaaagttggattataccaagatttaaaacaca |
259 |
Q |
| |
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| ||| | || ||||| |||||||||||||||||||||| |
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| T |
19685474 |
tcaagctgcagtgttggcttataccaagatttaaaacaca |
19685513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 19629377 - 19629142
Alignment:
| Q |
20 |
accagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaa |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| || | |||| | || ||||| |||||||||||||| ||||| |||||||| |||||| |
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| T |
19629377 |
accagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagcctccaaccctcaaacttctaaa |
19629278 |
T |
|
| Q |
120 |
tggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgttttagaaagcaacaccttcaatgatc |
219 |
Q |
| |
|
|||||||| | ||||| ||||| |||||| ||| |||||||||| | ||||||||| |||| | |||| ||||||||||||| ||| |||||| |||| |
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| T |
19629277 |
tggtatctcaatttaatgtggccttttacattgtgctctatgcttgtgacttggattagtgggcatgccattgttttagaaagtaacttcttcaaagatc |
19629178 |
T |
|
| Q |
220 |
ttaagttacaaagttggattataccaagatttaaaa |
255 |
Q |
| |
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| ||| | || ||||| |||||||||||||||||| |
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| T |
19629177 |
tcaagctgcagtgttggcttataccaagatttaaaa |
19629142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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