View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_high_18 (Length: 361)

Name: NF19922_high_18
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_high_18
NF19922_high_18
[»] chr4 (9 HSPs)
chr4 (1-310)||(5074349-5074656)
chr4 (51-128)||(32592877-32592954)
chr4 (58-128)||(13493018-13493088)
chr4 (51-128)||(11021845-11021922)
chr4 (51-128)||(16491819-16491896)
chr4 (51-128)||(22487392-22487469)
chr4 (51-128)||(39385295-39385372)
chr4 (51-128)||(43750119-43750196)
chr4 (51-128)||(46481089-46481166)
[»] chr5 (5 HSPs)
chr5 (51-128)||(43197035-43197112)
chr5 (51-128)||(41137313-41137390)
chr5 (52-128)||(3598586-3598662)
chr5 (51-128)||(14868845-14868922)
chr5 (51-128)||(18786115-18786192)
[»] chr6 (3 HSPs)
chr6 (51-128)||(28853657-28853734)
chr6 (16-49)||(9341312-9341345)
chr6 (51-128)||(16525365-16525442)
[»] chr3 (4 HSPs)
chr3 (63-128)||(14545970-14546035)
chr3 (51-128)||(42093529-42093606)
chr3 (51-128)||(52835717-52835794)
chr3 (51-128)||(55092379-55092456)
[»] chr2 (9 HSPs)
chr2 (51-128)||(3371474-3371551)
chr2 (51-128)||(18369147-18369224)
chr2 (51-128)||(7877458-7877535)
chr2 (51-128)||(12806721-12806798)
chr2 (51-128)||(13572643-13572720)
chr2 (51-120)||(17457860-17457929)
chr2 (51-128)||(30432729-30432806)
chr2 (51-128)||(37609090-37609167)
chr2 (51-128)||(42705124-42705201)
[»] chr1 (5 HSPs)
chr1 (51-128)||(43191790-43191867)
chr1 (51-128)||(14602182-14602259)
chr1 (51-128)||(33619030-33619107)
chr1 (51-128)||(37172382-37172459)
chr1 (51-120)||(39288296-39288365)
[»] scaffold0170 (1 HSPs)
scaffold0170 (51-128)||(8676-8753)
[»] scaffold0167 (1 HSPs)
scaffold0167 (51-128)||(4521-4598)
[»] scaffold0147 (1 HSPs)
scaffold0147 (63-128)||(25295-25360)
[»] scaffold0103 (1 HSPs)
scaffold0103 (51-128)||(43411-43488)
[»] scaffold0006 (1 HSPs)
scaffold0006 (51-128)||(212546-212623)
[»] chr8 (5 HSPs)
chr8 (51-128)||(3272892-3272969)
chr8 (51-128)||(6891950-6892027)
chr8 (51-128)||(6943829-6943906)
chr8 (51-128)||(13154411-13154488)
chr8 (51-128)||(31403047-31403124)
[»] chr7 (3 HSPs)
chr7 (51-128)||(34487314-34487391)
chr7 (51-128)||(42517039-42517116)
chr7 (19-51)||(5758407-5758439)
[»] scaffold0330 (1 HSPs)
scaffold0330 (19-51)||(4206-4238)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 5074349 - 5074656
Alignment:
Q  1 agaaaaggtaacccaaacacatgctattttatttatatatagtatagataattttaatccttattttgcgggactaaaatcaaataatccatctattaca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5074349 agaaaaggtaacccaaa-acatgctattttatttatatatagtatagataattttaatccttattttgcaggactaaaatcaaataatccatctattaca 5074447  T
Q  101 aaaatcaaatcgaatatgaaacaatttttgcataggagcaactaacctccatcgacggtcgaacctatgaggcataagatgagttatcttccctcaacct 200  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5074448 aaaatcaaatccaatatgaaacaa-ttttgcataggagcaactaacctccatcgacggtcgaacctatgaggcataagatgagttatcttccctcaacct 5074546  T
Q  201 gannnnnnnncttcatatacataagtgttggatcaaacctttaactttaaccatatatttaaaatggtctaaatcccttagctataaccacgaaccttat 300  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5074547 gatttttttttttcatatacataagtgttggatcaaacctttaactttaaccatatatttaaaatggtctaaatcccttagctataaccacgaaccttat 5074646  T
Q  301 attacttgtc 310  Q
    ||||||||||    
T  5074647 attacttgtc 5074656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 32592954 - 32592877
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || || ||||||||  | |||||| |||||||| |||||||    
T  32592954 attttagtcctcattttgagggactaaaatcaaatattctatatattacaaggaccaaatccaatatgaatcaatttt 32592877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 13493088 - 13493018
Alignment:
Q  58 tccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||| |||||| ||||||||||||||||| || |  |||||||| || |||||| |||||||| |||||||    
T  13493088 tcctcattttgagggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaatttt 13493018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 11021845 - 11021922
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  11021845 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 11021922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 16491819 - 16491896
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| |||| |||||||||||| || |  |||||||| || |||||| |||||||| |||||||    
T  16491819 attttagtcctcattttgagggattaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaatttt 16491896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 22487392 - 22487469
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  22487392 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 22487469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 39385372 - 39385295
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| ||||||  |||||||||||||||| || |  ||||||||  |||||||| |||||||| |||||||    
T  39385372 attttagtcctcattttgaaggactaaaatcaaatattctacatattacaagtatcaaatccaatatgaatcaatttt 39385295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 43750119 - 43750196
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||| ||||| || |  ||||||||  | |||||| ||||||||||||||||    
T  43750119 attttagtcctcattttgagggactaaaataaaatattctacatattacaaggaccaaatccaatatgaaacaatttt 43750196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 46481089 - 46481166
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  46481089 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 46481166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 43197112 - 43197035
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||| ||||| || || ||||||||| | ||||||||||||||| |||||||    
T  43197112 attttagtcctcattttgagggactaaaattaaatattctatatattacaaagaccaaatcgaatatgaatcaatttt 43197035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 41137313 - 41137390
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  |||||||| || |||||| |||||||| |||||||    
T  41137313 attttagtcctcattttgggggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaatttt 41137390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 3598586 - 3598662
Alignment:
Q  52 ttttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    ||||| |||| |||||| ||||||||||||||||| || |  ||||||||  |||||||| |||||||| |||||||    
T  3598586 ttttagtcctcattttgagggactaaaatcaaatattctacgtattacaaggatcaaatccaatatgaatcaatttt 3598662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 14868845 - 14868922
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  14868845 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 14868922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 18786192 - 18786115
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  18786192 attttagtcctcattttgagggactaaaatcaaatattcgacatattacaaggaccaaatccaatatgaatcaatttt 18786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 28853657 - 28853734
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  |||||||| || |||||| |||||||| |||||||    
T  28853657 attttagtcctcattttgagggactaaaatcaaatattctacatattacaagaaccaaatctaatatgaatcaatttt 28853734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 9341312 - 9341345
Alignment:
Q  16 aacacatgctattttatttatatatagtatagat 49  Q
    ||||||||||||||| ||||||||||||||||||    
T  9341312 aacacatgctattttctttatatatagtatagat 9341345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 16525365 - 16525442
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  16525365 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 16525442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 14546035 - 14545970
Alignment:
Q  63 attttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| ||||||||||||||||| || |  ||||||||| |||||||| |||||||| |||||||    
T  14546035 attttgagggactaaaatcaaatactctacatattacaaagatcaaatccaatatgaatcaatttt 14545970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 42093606 - 42093529
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  42093606 attttagtcctcattttgagggactaaaatcaaatattctacgtattacaaggaccaaatccaatatgaatcaatttt 42093529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 52835717 - 52835794
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  52835717 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 52835794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 55092379 - 55092456
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || || ||||||||  |  ||||| |||||||| |||||||    
T  55092379 attttagtcctcattttgagggactaaaatcaaatattctatatattacaaggactaaatccaatatgaatcaatttt 55092456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 3371474 - 3371551
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  |||||||| || |||||| |||||||| |||||||    
T  3371474 attttagtcctcattttgagggactaaaatcaaatattctacatattacaagaaccaaatccaatatgaatcaatttt 3371551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 18369224 - 18369147
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| ||||||||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  18369224 attttagtccttattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 18369147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 7877535 - 7877458
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  7877535 attttagtcctcattttgagggactaaaatcaaatattcaacatattacaaggaccaaatccaatatgaatcaatttt 7877458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 12806721 - 12806798
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  12806721 attttagtcctcattttgagggactaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaatttt 12806798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 13572643 - 13572720
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  13572643 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 13572720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 17457929 - 17457860
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaa 120  Q
    |||||| ||||||||||| ||||||||||||||||| || |  ||||||||  | |||||| ||||||||    
T  17457929 attttagtccttattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaa 17457860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 30432806 - 30432729
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  30432806 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 30432729  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 37609167 - 37609090
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  37609167 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 37609090  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 42705124 - 42705201
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  42705124 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 42705201  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 43191867 - 43191790
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||| | |||||| |||||||| |||||||    
T  43191867 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 43191790  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 14602182 - 14602259
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  14602182 attttagtcctcattttgagggactaaaatcaaatattctaaatattacaaggaccaaatccaatatgaatcaatttt 14602259  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 33619107 - 33619030
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  33619107 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 33619030  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 37172459 - 37172382
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  37172459 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 37172382  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 39288365 - 39288296
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaa 120  Q
    |||||| ||||  ||||| ||||||||||||||||| || | |||||||||| | |||||| ||||||||    
T  39288365 attttagtcctcgttttgagggactaaaatcaaatattctacctattacaaagaccaaatccaatatgaa 39288296  T

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Target: scaffold0170 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 8753 - 8676
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    ||||||||||| |||||| ||||||||||||||||| || |  ||||||||  |  ||||| |||||||| |||||||    
T  8753 attttaatcctcattttgagggactaaaatcaaatattctacatattacaaggactaaatccaatatgaatcaatttt 8676  T

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Target: scaffold0167 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 4598 - 4521
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  4598 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 4521  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 25295 - 25360
Alignment:
Q  63 attttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| ||||||||||||||||| || |  ||||||||  |||||||| |||||||| |||||||    
T  25295 attttgagggactaaaatcaaatattctacatattacaaggatcaaatccaatatgaatcaatttt 25360  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 43488 - 43411
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  43488 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 43411  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 212623 - 212546
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  212623 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 212546  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 3272892 - 3272969
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| |||| |||||||||||| || |  ||||||||| | |||||| |||||||| |||||||    
T  3272892 attttagtcctcattttgagggattaaaatcaaatattctacatattacaaagaccaaatccaatatgaatcaatttt 3272969  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 6891950 - 6892027
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||| ||||| || |  ||||||||  | ||||||||||||||| |||||||    
T  6891950 attttagtcctcattttgagggactaaaattaaatattctacatattacaaggaccaaatcgaatatgaatcaatttt 6892027  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 6943829 - 6943906
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| ||||||  |||||||||||||||| || || ||||||||  | |||||| |||||||| |||||||    
T  6943829 attttagtcctcattttgaaggactaaaatcaaatattctatatattacaaggaccaaatccaatatgaatcaatttt 6943906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 13154411 - 13154488
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  13154411 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 13154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 31403124 - 31403047
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  31403124 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 31403047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 34487314 - 34487391
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  34487314 attttagtcctcattttgagggactaaaatcaaatattctacatattacaatgaccaaatccaatatgaatcaatttt 34487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 42517039 - 42517116
Alignment:
Q  51 attttaatccttattttgcgggactaaaatcaaataatccatctattacaaaaatcaaatcgaatatgaaacaatttt 128  Q
    |||||| |||| |||||| ||||||||||||||||| || |  ||||||||  | |||||| |||||||| |||||||    
T  42517039 attttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaatttt 42517116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5758407 - 5758439
Alignment:
Q  19 acatgctattttatttatatatagtatagataa 51  Q
    |||||||||||| ||||||||||||||||||||    
T  5758407 acatgctattttctttatatatagtatagataa 5758439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 4238 - 4206
Alignment:
Q  19 acatgctattttatttatatatagtatagataa 51  Q
    ||||| |||||||||||||||||||||||||||    
T  4238 acatgttattttatttatatatagtatagataa 4206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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