View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_high_21 (Length: 339)

Name: NF19922_high_21
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_high_21
NF19922_high_21
[»] chr5 (2 HSPs)
chr5 (4-164)||(6842770-6842930)
chr5 (223-317)||(6842620-6842714)
[»] chr1 (3 HSPs)
chr1 (41-164)||(12532377-12532500)
chr1 (82-164)||(36612086-36612168)
chr1 (82-164)||(40150653-40150735)
[»] chr7 (5 HSPs)
chr7 (83-164)||(37495562-37495643)
chr7 (79-164)||(19023447-19023532)
chr7 (79-164)||(20731104-20731189)
chr7 (82-164)||(10055273-10055355)
chr7 (87-164)||(46997176-46997253)
[»] chr3 (4 HSPs)
chr3 (81-164)||(45445310-45445393)
chr3 (82-164)||(55091872-55091954)
chr3 (82-164)||(38445067-38445149)
chr3 (87-164)||(26596239-26596316)
[»] chr4 (1 HSPs)
chr4 (82-164)||(15624729-15624811)
[»] chr2 (1 HSPs)
chr2 (87-164)||(43655148-43655225)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 6842930 - 6842770
Alignment:
Q  4 tgactataatgagctatgttttatatagagattataactaaactaataaatattaatcaacttaaagcaaacatcatcagtcaatatgtccgagtggtta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  6842930 tgactataatgagctatgttttatatagagattataactaaactaataaatattaaccaacttaaagcaaagatcatcagtcaatatgtccgagtggtta 6842831  T
Q  104 aggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6842830 aggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 6842770  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 6842714 - 6842620
Alignment:
Q  223 gggacaaaaatattctcatcatatcctagtttacatttacatttgatggtaaaaatctgtgatttagttatggtaaagatctagatcaattacat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6842714 gggacaaaaatattctcatcatatcctagtttacatttacatttgatggtaaaaatctgtgatttagttatggtaaagatctagatcaattacat 6842620  T

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Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 12532377 - 12532500
Alignment:
Q  41 ctaaactaataaatattaatcaacttaaagcaaacatcatcagtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcg 140  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12532377 ctaaactaataaatattaatcaacttaaaacaaaattcatcagtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggctacgcccgcg 12532476  T
Q  141 caggttcgaaccctgctgttgacg 164  Q
    ||||||||||||||||||||||||    
T  12532477 caggttcgaaccctgctgttgacg 12532500  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 36612168 - 36612086
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36612168 agtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 36612086  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 40150735 - 40150653
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40150735 agtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 40150653  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 37495643 - 37495562
Alignment:
Q  83 gtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37495643 gtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 37495562  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 19023532 - 19023447
Alignment:
Q  79 atcagtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19023532 atcagtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 19023447  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 20731104 - 20731189
Alignment:
Q  79 atcagtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20731104 atcagtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 20731189  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 10055355 - 10055273
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10055355 agtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 10055273  T

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Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 46997176 - 46997253
Alignment:
Q  87 atatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46997176 atatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 46997253  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 45445393 - 45445310
Alignment:
Q  81 cagtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45445393 cagtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 45445310  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 55091954 - 55091872
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55091954 agtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 55091872  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 38445149 - 38445067
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38445149 agtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggctacgcccgcgcaggttcgaaccctgctgtcgacg 38445067  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 26596316 - 26596239
Alignment:
Q  87 atatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  26596316 atatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 26596239  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 15624811 - 15624729
Alignment:
Q  82 agtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  15624811 agtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 15624729  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 43655148 - 43655225
Alignment:
Q  87 atatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  43655148 atatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 43655225  T

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