View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19922_high_23 (Length: 329)
Name: NF19922_high_23
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 36399989 - 36400285
Alignment:
| Q |
15 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36399989 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
36400088 |
T |
|
| Q |
115 |
aaattggaagagactccccaaatttaattggacatgtaagttatatatattaaaaagagtagccttaaaacaggcctacaatctaatgatatataac--a |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36400089 |
aaattggaagagactccccaaatttaattggacatgtaagttaaatatattaaaaagagtagccttaaaacaggcctacaatctaatgatatataacata |
36400188 |
T |
|
| Q |
213 |
tgtatatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36400189 |
tgtatatttaaaaactc--ttgtgcatttataggtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
36400285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 36407443 - 36407745
Alignment:
| Q |
14 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36407443 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
36407542 |
T |
|
| Q |
114 |
gaaattggaagagactccccaaatttaattggacatgtaagttatatatattaaaaagagtagccttaaaacaggcctacaatctaatgat-----atat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| | || |
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|
| T |
36407543 |
gaaattggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacat |
36407642 |
T |
|
| Q |
209 |
aacatgtatatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtct |
308 |
Q |
| |
|
|||| | |||||||||| | |||||| |||||||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
36407643 |
gacatatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtct |
36407742 |
T |
|
| Q |
309 |
tat |
311 |
Q |
| |
|
||| |
|
|
| T |
36407743 |
tat |
36407745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 36412566 - 36412868
Alignment:
| Q |
14 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412566 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
36412665 |
T |
|
| Q |
114 |
gaaattggaagagactccccaaatttaattggacatgtaagttatatatattaaaaagagtagccttaaaacaggcctacaatctaatgat-----atat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| | || |
|
|
| T |
36412666 |
gaaattggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacat |
36412765 |
T |
|
| Q |
209 |
aacatgtatatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtct |
308 |
Q |
| |
|
|||| | |||||||||| | |||||| |||||||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
36412766 |
gacatatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtct |
36412865 |
T |
|
| Q |
309 |
tat |
311 |
Q |
| |
|
||| |
|
|
| T |
36412866 |
tat |
36412868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 36419629 - 36419918
Alignment:
| Q |
15 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36419629 |
gaatatgcaatgcaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
36419728 |
T |
|
| Q |
115 |
aaattggaagagactccccaaatttaattggacatgtaagttatatatattaaaaagagtagccttaaaacaggcctacaatctaatgatatataacatg |
214 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| | ||| ||||| | || | | |
|
|
| T |
36419729 |
agacaggaagagactccccaaatttaattggacatgtaagttatatataataaaaagagtggccttaaaattggccgataatttaatggtgcatgatgta |
36419828 |
T |
|
| Q |
215 |
tatatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaacca |
304 |
Q |
| |
|
||||||| | | |||| | ||||| || |||||||| |||||||||||| || ||||||||||| |||||| ||||||||||||| |
|
|
| T |
36419829 |
cttatttaatcattatgttatgcatttgtaggtgtggacactatggacagaaggaaaagccttggatatggttgatcaagcactaaacca |
36419918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 36429591 - 36429734
Alignment:
| Q |
14 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
36429591 |
agaatatgcaatggaaggacgatattcaacgaaatctgatgtcttcagttatggggtcatactactggagactattgctggccaaagaaacacacattgt |
36429690 |
T |
|
| Q |
114 |
gaaattggaagagactccccaaatttaattggacatgtaagtta |
157 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36429691 |
gaaaaaggaagagaatccccaaatttaattggacatgtaagtta |
36429734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 36436054 - 36436200
Alignment:
| Q |
15 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
36436054 |
gaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattgctggccaaagaaacacacattgtg |
36436153 |
T |
|
| Q |
115 |
aaattggaagagactccccaaatttaattggacatgtaagttatata |
161 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36436154 |
aaacaggaagagactccccaaatttaattggacatgtaagttatata |
36436200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 36376556 - 36376702
Alignment:
| Q |
15 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
36376556 |
gaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattgccggccaaagaaacacacattgtg |
36376655 |
T |
|
| Q |
115 |
aaattggaagagactccccaaatttaattggacatgtaagttatata |
161 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36376656 |
aaacaggaagagactccccaaatttaattggacatgtaagttatata |
36376702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 36370790 - 36370935
Alignment:
| Q |
14 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | ||||||||| ||||| |
|
|
| T |
36370790 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattgctggccaaagaaacacatattgt |
36370889 |
T |
|
| Q |
114 |
gaaattggaagagactccccaaatttaattggacatgtaagttata |
159 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
36370890 |
gaaacaggaagagaatcaccaaatttaattggacatgtaagttata |
36370935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 36401282 - 36401427
Alignment:
| Q |
14 |
agaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||| |
|
|
| T |
36401282 |
agaatatgcaatggaaggacgatattcaacgaaatctgatgtctttagttatggggtcttactgctagagattattgctggtcaaagaaacacacattgt |
36401381 |
T |
|
| Q |
114 |
gaaattggaagagactccccaaatttaattggacatgtaagttata |
159 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36401382 |
gaaacaggaagagcttccccaaatttaattggacatgtaagttata |
36401427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 36389792 - 36390096
Alignment:
| Q |
15 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | ||||||||||||| || |
|
|
| T |
36389792 |
gaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattgctggccaaagaaacacacattctg |
36389891 |
T |
|
| Q |
115 |
aaattggaagagactccccaaatttaattggacatgtaagttatatatattaa-------aaagagtagccttaaaacaggcctacaatctaatgatata |
207 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||||||| || | | ||| ||| |||| |||||||| || | | ||| |||| | |
|
|
| T |
36389892 |
aaacaggaagagcatccctgaatttaattggacatgtaagttctaaaaaataaaataaagaaaaagtatccttaaaattggtcgaaaatttaat--cgtg |
36389989 |
T |
|
| Q |
208 |
taacatg---tatatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaacca |
304 |
Q |
| |
|
||| ||| ||| |||||| | | |||||||||||| || |||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
36389990 |
taagatgtattatttttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagggccttggatacagttgatccagcactaaacca |
36390089 |
T |
|
| Q |
305 |
gtcttat |
311 |
Q |
| |
|
||||||| |
|
|
| T |
36390090 |
gtcttat |
36390096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 36436267 - 36436361
Alignment:
| Q |
217 |
tatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
|||||||| | | |||||||||||| || |||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
36436267 |
tatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagggccttggatacagttgatccagcactaaaccagtcttat |
36436361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 36376757 - 36376851
Alignment:
| Q |
217 |
tatttaaaaactctgttgtacatttatatgtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
|||||||| | | |||||||||||| || |||||||| |||||||||||| ||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
36376757 |
tatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagagccttggatatagttgatccagaactaaaccagttttat |
36376851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 36371035 - 36371088
Alignment:
| Q |
258 |
tggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
36371035 |
tggacagaaggaagggccttggatatggttgatcaagcactaaaccattcttat |
36371088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 36429823 - 36429878
Alignment:
| Q |
256 |
tatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
36429823 |
tatggacagaaggaagagccttggatatagttgatccagaactaaaccagttttat |
36429878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 36401518 - 36401571
Alignment:
| Q |
258 |
tggacagaagaaagggccttggatatagttgatgaagcactaaaccagtcttat |
311 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
36401518 |
tggacagaaggaagagccttggatatagttgatccagaactaaaccagttttat |
36401571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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