View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19922_high_29 (Length: 284)
Name: NF19922_high_29
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 49278952 - 49279219
Alignment:
| Q |
1 |
tttacaaactttttccaaataataaaccaatt-acaaactttacagtatgaactaaattgactaagcttctgaagctacactattttccagttaataaca |
99 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49278952 |
tttacaaactttttccaaataagaaactaatttacaaactttatagtatgaactaaattgactaagcttctgaagctacactattttccggttaataaca |
49279051 |
T |
|
| Q |
100 |
gaatcaagccacactacatgacaatttttgcttcttgagatgggttgcctgagtttcctcagggaatcgatagtcgaaaaattcttcaattctaaaagaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49279052 |
gaatcaagccacactacatgacaatttttgcttcttgagatgggttgcctgagtttcctcagggaatcgatagtcgaaaaattcttcaattctaaaagaa |
49279151 |
T |
|
| Q |
200 |
ccatcttgggcagccacttttagtctcttctgtcgcttcttgggcagcttaggcaggactaagctaac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49279152 |
ccatcttgggcagccacttttagtctcttctgtcgcttcttgggcagcttaggcaggactaagctaac |
49279219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 267
Target Start/End: Original strand, 49275503 - 49275653
Alignment:
| Q |
120 |
acaatttttgcttcttgagatgggttgcctgagtttcctcagggaatcgatagtcgaaaaattcttcaattctaaaagaaccatcttgggcagccacttt |
219 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || || | ||| |
|
|
| T |
49275503 |
acaacttttgcttcttgagatggtttacctgagtttcctcagggaatcgatagttgaaaaattcttcaattctagaagaaccatcttcggtagtaagttt |
49275602 |
T |
|
| Q |
220 |
tagtc---tcttctgtcgcttcttgggcagcttaggcaggactaagctaac |
267 |
Q |
| |
|
| ||| |||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
49275603 |
tcgtctcttcttctgttgcttcttgggcagcttaggcaggaccaagctaac |
49275653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 2287845 - 2287905
Alignment:
| Q |
132 |
tcttgagatgggttgcctgagtttcctcagggaatcgatagtcgaaaaattcttcaattct |
192 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
2287845 |
tcttgagattggttgtatgcgtttcctcagggaatagatagtcgataaattcttcgattct |
2287905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 34790927 - 34790868
Alignment:
| Q |
133 |
cttgagatgggttgcctgagtttcctcagggaatcgatagtcgaaaaattcttcaattct |
192 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
34790927 |
cttgagattggttgtctgtgtttcctcagggaatagatagtcgatgaattcttcgattct |
34790868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University