View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_3 (Length: 503)
Name: NF19922_high_3
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 125 - 495
Target Start/End: Original strand, 28273962 - 28274332
Alignment:
| Q |
125 |
ttgaggttgtattgatcaattaataatcgttgtggatgggaaattctgacaaattattatattttatttgtgttgcaaaaaattgtttatgctgaacaag |
224 |
Q |
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| T |
28273962 |
ttgaggttgtattgatcaattaataatcgttgtggatgggaaattctgacaaattattatattttatttgggttggaaaaaattgtttatgctgaacaag |
28274061 |
T |
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| Q |
225 |
ttatgggtaataataaacagaaactagttaagatggtggtctatactatagtggtgttgaggaatgtgtattgattgattaaataagaaaacatagtgta |
324 |
Q |
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| T |
28274062 |
ttatgggtaataataaacagaaactagttaagatggtggtctatactatagtggtgttgaggaatgtgtattgattgattaaataagaaaacatagtgta |
28274161 |
T |
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| Q |
325 |
agttggtagtgccctatatcacttcatccatccaacttcacttactcgacacacttgttatacacataggaaacatatcatttttatttcacacgcccct |
424 |
Q |
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| T |
28274162 |
agttggtagtgccctatatcacttcatccatccaacttcacttactcgacacacttgttatacacataggaaacatatcatttttatttcacacgcccct |
28274261 |
T |
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| Q |
425 |
ttccattaccattacccatattctctcttccacaattccttaaacatcttgtcctcatcaaaatttcatct |
495 |
Q |
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| T |
28274262 |
ttccattaccattacccatattctctcttccacaattccttaaacatcttgtcctcatctcaatttcatct |
28274332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 28273864 - 28273933
Alignment:
| Q |
18 |
gaatgtgtcattaaccaaatcattcatcaaaaactttccaccttaactaaaccccctccaccatcaaagg |
87 |
Q |
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| T |
28273864 |
gaatgtgtcattaaccaaatcattcatcaaaaactttccaccttaactaaaccccctccaccatcaaagg |
28273933 |
T |
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