View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_32 (Length: 257)
Name: NF19922_high_32
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 13904103 - 13904334
Alignment:
| Q |
11 |
caaaggtttgacaccttgtaatgtttcatcaagacacnnnnnnnnggttgtgattccaattgttgcctctttaggaggtgcactttttctttcattggta |
110 |
Q |
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| T |
13904103 |
caaaggtttgacaccttgtaatgtttcatcaagacacaaaaaaaaggttgtgattccaattgttgcctctttaggaggtgcactttttctttcattggta |
13904202 |
T |
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| Q |
111 |
tttgttggcatatttttgttatgctacaagaaaaaatcaagatctttaaaaaagtcttcaattaagatacaagatccattttcaatttggtacttcaatg |
210 |
Q |
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| T |
13904203 |
tttgttggcatatttttgttatgctacaagaaaaaatcaagatctttaaaaaagtcttcaattaagatacaagatccattttcaatttggtacttcaatg |
13904302 |
T |
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| Q |
211 |
gaagagttgtatataatgacataattgaagct |
242 |
Q |
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| T |
13904303 |
gaagagttgtatataatgacataattgaagct |
13904334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 13605836 - 13605650
Alignment:
| Q |
56 |
ggttgtgattccaattgttgcctctttaggaggtgcactttttctttcattggtatttgttggcatatttttgttatgctacaagaaaaaatcaagatct |
155 |
Q |
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| T |
13605836 |
ggttgtgattccaatcgttgcttctttaggaggtgcgctttttctttcattggtaattgttggcgtaattttgttatgctacaagaaaaaatcaagaact |
13605737 |
T |
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| Q |
156 |
ttaaaaaagtcttcaattaagatacaagatccattttcaatttggtacttcaatggaagagttgtatataatgacataattgaagct |
242 |
Q |
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| T |
13605736 |
ttacgaaagtcttcctttaagatgccaaatccattttcaatttggtacttcaatggaagagttgtatatagcgacataattgaagct |
13605650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 9631410 - 9631596
Alignment:
| Q |
56 |
ggttgtgattccaattgttgcctctttaggaggtgcactttttctttcattggtatttgttggcatatttttgttatgctacaagaaaaaatcaagatct |
155 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| || |
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| T |
9631410 |
ggttgtgattccaatcgttgcttctttaggaggtgcgctttttctttcattggtaattgttggcgtaattttgttatgctacaagaaaaaatcaagaact |
9631509 |
T |
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| Q |
156 |
ttaaaaaagtcttcaattaagatacaagatccattttcaatttggtacttcaatggaagagttgtatataatgacataattgaagct |
242 |
Q |
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| T |
9631510 |
ttacgaaagtcttcctttaagatgccaaatccattttcaatttggtacttcaatggaagagttgtatatagcgacataattgaagct |
9631596 |
T |
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