View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_38 (Length: 249)
Name: NF19922_high_38
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_38 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28609194 - 28608946
Alignment:
| Q |
1 |
tctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattacca |
100 |
Q |
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| T |
28609194 |
tctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaa |
28609095 |
T |
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| Q |
101 |
tagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtg |
200 |
Q |
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| T |
28609094 |
tagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtg |
28608995 |
T |
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| Q |
201 |
tcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacct |
249 |
Q |
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| T |
28608994 |
tcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacct |
28608946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 437710 - 437957
Alignment:
| Q |
1 |
tctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattacca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| | |
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| T |
437710 |
tctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaa |
437809 |
T |
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| Q |
101 |
tagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtg |
200 |
Q |
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| T |
437810 |
tagatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcg |
437909 |
T |
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| Q |
201 |
tcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacc |
248 |
Q |
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| T |
437910 |
tcctgccattctccatgcaacagctaaggcttcgcgatcatcaggacc |
437957 |
T |
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