View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_5 (Length: 493)
Name: NF19922_high_5
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 42897534 - 42897069
Alignment:
| Q |
13 |
aatatgtaaaaatgggagaccgaaaactagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagt |
112 |
Q |
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| T |
42897534 |
aatatgtaaaaatgggagaccaaaaattagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagt |
42897435 |
T |
|
| Q |
113 |
cattcaaacacatttattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttgaataagaacacccataaa |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
42897434 |
cattcaaacacattcattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttcaataagaacacccctaaa |
42897335 |
T |
|
| Q |
213 |
ttgtgaaattgatggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgggaagcaatggcgtatcttatatgcgtgtaacaggctga |
312 |
Q |
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| T |
42897334 |
ttgtgaaattgatggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgagaagcaatggcgtatcttatatgcgtgtaacaggctga |
42897235 |
T |
|
| Q |
313 |
aaacaaaaaacatattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtatactgaagacat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897234 |
aaacaaaaaacatattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtatactgaagacat |
42897135 |
T |
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| Q |
413 |
ttgttgttactgtaatcgtgtaatgatccgcttatattgtagtaagttgtaactattggcagttag |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897134 |
ttgttgttactgtaatcgtgtaatgatccgcttatattgtagtaagttgtaactattggcagttag |
42897069 |
T |
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