View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_6 (Length: 433)
Name: NF19922_high_6
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 4091991 - 4091587
Alignment:
| Q |
18 |
agtcatgatggctacgaaccctagcctagtggataatgcttggggnnnnnnnntactacttgtgtatttggatgctagcatttgttattacatgcaagtt |
117 |
Q |
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| T |
4091991 |
agtcatgatggctacgaaccctagcctagtggataatgcttggggaaaaaaa-tactacttgtgtatttggatgctagcatttgttattacatgcaagtt |
4091893 |
T |
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| Q |
118 |
tgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttannnnnnnnaataataattaatgagattagcaaaatcaa |
217 |
Q |
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| T |
4091892 |
tgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttattttttttaataataat----gagattagcaaaatcaa |
4091797 |
T |
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| Q |
218 |
ttttaaaagaaaattttgatgtaagtcaaatattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaag |
317 |
Q |
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| T |
4091796 |
ttttaaaagaaaattttgatgcaagtcaaatattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaag |
4091697 |
T |
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| Q |
318 |
acaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaagcattccttctcctatctct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4091696 |
acaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaattaaaaaattcaaagaaattccaaacagaagcattccttctcctatctct |
4091597 |
T |
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| Q |
418 |
gctcctcctc |
427 |
Q |
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| T |
4091596 |
gcttctcctc |
4091587 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 48182321 - 48182435
Alignment:
| Q |
299 |
gcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaag |
398 |
Q |
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|||||||||||||||||||||| || || ||||| ||||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
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| T |
48182321 |
gcagatttcatatgggaagacagccactaataatagtagcagatgcagaactgtgtaaagaggttggaatcaaaaaatttaaagacattccaaacagaag |
48182420 |
T |
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| Q |
399 |
cattccttctcctat |
413 |
Q |
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|| ||| |||||||| |
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| T |
48182421 |
cactccctctcctat |
48182435 |
T |
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