View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_1 (Length: 608)
Name: NF19922_low_1
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 116 - 596
Target Start/End: Original strand, 32837009 - 32837489
Alignment:
| Q |
116 |
tgtgcgatcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32837009 |
tgtgcgatcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacacgctcagtcgct |
32837108 |
T |
|
| Q |
216 |
catatggaagcagtggatatgaaagaaactcaatggcaaatacagcacagcgaaagagtggggaattccagaggaatgtttttaaaagaatgtaaaaaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32837109 |
catatggaagcagtggatatgaaagaaactcaatggcaaatacagcacagcgaaagagtggggaattccagaggaatgtttttaaaagaatgtaaaaaca |
32837208 |
T |
|
| Q |
316 |
taaaccacaatgtctttaaaagaatgtttttctaaataaggctactaccatatgctaaaccagaatatttgttcgcaagtaaaactcaaaagtatctgcc |
415 |
Q |
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| T |
32837209 |
taaaccacaatgtctttaaaagaatgtttttctaaataaggctactaccatatgctaaaccagaatatttgttcgcaagtaaaactcaaaagtatctgcc |
32837308 |
T |
|
| Q |
416 |
agtacatacttttttgccactaccatatggagaattctttctccttttgtattgaaaccaagacatttagagagttttgttaatgtgtttcnnnnnnnnn |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32837309 |
agtacatacttttttgccactaccatatggagaattctttctccttttgtattgaaaccaagacatttagagagttttgttaatgtgtttcaaagaaaaa |
32837408 |
T |
|
| Q |
516 |
nnnnnnnnnnncgatgaaatgactgctcaatatctagtacagtaattgccttccctttatctagtagaacacagaactaag |
596 |
Q |
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| T |
32837409 |
taaaagaaaaacgatgaaatgactgctcaatatctagtacaataattgtcttccctttatctcgtagaacacagaactaag |
32837489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32836892 - 32836983
Alignment:
| Q |
1 |
ggcaaatgctacatatggcgaatccatcggaatacagcggcatgcatcgaacaataatcaatgaaattttagaaagcaaacggcatgaactt |
92 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32836892 |
ggcaaatgctacatatggcgaatccatcggaatacagtggcatgcatcgaacaataatcaatgaaattttagaaagcaaacggcatgaactt |
32836983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 8e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 123 - 477
Target Start/End: Complemental strand, 19916486 - 19916136
Alignment:
| Q |
123 |
tcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgctcatatgg |
222 |
Q |
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||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||| | |||||||||||||||||| |
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| T |
19916486 |
tcttgattattcctgctcgtgattttctgcaagtatcgccaatgcttcaagctaaaagt----tatcctgacatgcagatacgctcagtcgctcatatgg |
19916391 |
T |
|
| Q |
223 |
aagcagtggatatgaaagaaactcaatggcaa---atacagcacagcgaaagagtggggaattccagaggaatgtttttaaaagaatgtaaaaacataaa |
319 |
Q |
| |
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| | |||||||||||||| ||||||||| ||| |||||||||||| ||| | | |||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19916390 |
atgtagtggatatgaaaggaactcaatgccaattcatacagcacagcaaaacaatagggaattccagaagaatgtttttaaaagaaaataaaaacataaa |
19916291 |
T |
|
| Q |
320 |
ccacaatgtctttaaaagaatgtttttctaaataaggctact-accatatgctaaaccag-aatatttgttcgcaagtaaaactcaaaagtatctgccag |
417 |
Q |
| |
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| | | || ||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| ||| ||||||| |
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| T |
19916290 |
ctgccaagtatttaaaataatacttttctaaataaggctactgaccatatgctaaaccagaaatatttgtttagaagtaaaactaaaa---atctgcc-- |
19916196 |
T |
|
| Q |
418 |
tacatacttttttgccactaccatatggagaattctttctccttttgtattgaaaccaag |
477 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
19916195 |
gacatacttttttggcactgtcatgtggagaattctttctccttttgtattgaaaccaag |
19916136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 140 - 359
Target Start/End: Complemental strand, 19939752 - 19939534
Alignment:
| Q |
140 |
catgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgctcatatggaagcagtggatatgaaa |
239 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||| ||| ||||||||| |
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| T |
19939752 |
catgattttctgcaactatcgccaacgcttcaagctaaaagt----tatcctaacatacagacacgctcagtctctcatatggaactagttgatatgaaa |
19939657 |
T |
|
| Q |
240 |
gaaactcaatggcaa---atacagcacagcgaaagagtggggaattccagaggaatgtttttaaaagaatgtaaaaacataaaccacaatgtctttaaaa |
336 |
Q |
| |
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||||||||||| || |||||||||||| ||||| | |||| ||||||| ||| ||||||||||||| | ||||||||||||| | ||||||| |||| |
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| T |
19939656 |
gaaactcaatgtgaatagatacagcacagcaaaagaatagggagttccagaagaaagtttttaaaagaacgcaaaaacataaaccgcgatgtcttcaaaa |
19939557 |
T |
|
| Q |
337 |
gaatgtttttctaaataaggcta |
359 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
19939556 |
aaatgtttttctaaataaggcta |
19939534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 191 - 356
Target Start/End: Complemental strand, 19374658 - 19374490
Alignment:
| Q |
191 |
taacatgcagacatgctcagtcgctcatatggaagcagtggatatgaaagaaactcaatggcaa---atacagcacagcgaaagagtggggaattccaga |
287 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||| | ||||| | ||||| |||||| |
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| T |
19374658 |
taacatgcagacatgctcagtcgctcatatgaaagtagtagatatgaaagaaactcaatatcaagccatacagcacatcaaaagaatagggaaatccaga |
19374559 |
T |
|
| Q |
288 |
ggaatgtttttaaaagaatgtaaaaacataaaccacaatgtctttaaaagaatgtttttctaaataagg |
356 |
Q |
| |
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|||||||||| |||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
19374558 |
agaatgtttttcaaagaacgtaaaaacataaaccgcgatgtctttaaaaaaatgtttttctaaataagg |
19374490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 19916558 - 19916519
Alignment:
| Q |
50 |
aacaataatcaatgaaattttagaaagcaaacggcatgaac |
90 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
19916558 |
aacaataatcaatgaaatttt-gaaagcaaatggcatgaac |
19916519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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