View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_11 (Length: 400)
Name: NF19922_low_11
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 1324463 - 1324849
Alignment:
| Q |
13 |
aatattctaaagacatagatgagtgaacctataatcaccttcaacataatccttgacaaaaggtaacaatttacataggttggaaaaaacctcctgacgg |
112 |
Q |
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| T |
1324463 |
aatattctaaagacatatttgagtgaacctatattcaccttcaacataatccttgacaaaaggtaacaatttacataggttggaagaaacctcctgacgg |
1324562 |
T |
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| Q |
113 |
atggatcaagcttaaagtgatggtgccgacaagggggaataacgacatagcagggtgtggaagtcttttcacaattcagatgggcggtggatcaaatgtt |
212 |
Q |
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| T |
1324563 |
atagatcaagcttaaagtgatggtgccgacaagggggaataacgacatagtagggtgtggaagtcttttcacaattcagatggacggtggatcaaatgtt |
1324662 |
T |
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| Q |
213 |
acatcaagaagattggctcgggtgatgttcttcatgcagaaacgtggtgagtgtatatgaggttggatatggcttagagagatcatacatcgttatgtgt |
312 |
Q |
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| T |
1324663 |
acattaagaagattggctcgtgtgatgttcttcatgcagaaacgtggtgagtgtatctaaggttagatagggcttatagagatcatacatcgttatgtgt |
1324762 |
T |
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| Q |
313 |
gtgagtgttctaaactctaaaatactgagttaaatttttattcttaaagaaaaggtgtcttgatagataagaagtatgagttaaaca |
399 |
Q |
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| T |
1324763 |
gtgagtgttctaaactctaaaatactgagttaaatttttactcataaagaaaaggtgtcttggtagataagaagtatgagttaaaca |
1324849 |
T |
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