View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_low_2 (Length: 534)

Name: NF19922_low_2
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_low_2
NF19922_low_2
[»] chr6 (7 HSPs)
chr6 (183-528)||(1706770-1707115)
chr6 (1-221)||(1706558-1706777)
chr6 (183-315)||(34448393-34448526)
chr6 (168-316)||(5449485-5449635)
chr6 (183-295)||(5451067-5451180)
chr6 (168-300)||(34396935-34397066)
chr6 (185-221)||(34448364-34448400)
[»] chr2 (12 HSPs)
chr2 (159-298)||(4865474-4865612)
chr2 (168-316)||(37828633-37828781)
chr2 (184-315)||(25557836-25557969)
chr2 (183-255)||(34887885-34887957)
chr2 (159-284)||(29193172-29193297)
chr2 (168-221)||(37828570-37828623)
chr2 (164-251)||(23495088-23495171)
chr2 (183-316)||(29667569-29667702)
chr2 (239-318)||(37828444-37828522)
chr2 (187-250)||(41104735-41104798)
chr2 (168-221)||(37828601-37828655)
chr2 (238-310)||(23495215-23495287)
[»] chr1 (12 HSPs)
chr1 (195-320)||(42175219-42175344)
chr1 (183-305)||(27631011-27631134)
chr1 (165-252)||(29861615-29861700)
chr1 (168-221)||(29861555-29861608)
chr1 (185-316)||(30891957-30892087)
chr1 (168-221)||(30892145-30892198)
chr1 (187-316)||(51249167-51249296)
chr1 (168-221)||(51249327-51249380)
chr1 (168-226)||(30892077-30892135)
chr1 (183-248)||(628718-628783)
chr1 (168-221)||(30892113-30892167)
chr1 (167-210)||(14614399-14614443)
[»] chr8 (4 HSPs)
chr8 (168-326)||(1410636-1410793)
chr8 (159-221)||(1410564-1410626)
chr8 (168-223)||(8128886-8128941)
chr8 (164-231)||(13706140-13706208)
[»] chr7 (16 HSPs)
chr7 (192-305)||(23474940-23475053)
chr7 (192-305)||(23533280-23533393)
chr7 (186-305)||(23457368-23457488)
chr7 (186-305)||(23443346-23443470)
chr7 (168-317)||(1505542-1505692)
chr7 (159-316)||(9880930-9881087)
chr7 (168-221)||(2169146-2169199)
chr7 (166-315)||(2169175-2169322)
chr7 (183-317)||(42602532-42602667)
chr7 (249-319)||(23534134-23534204)
chr7 (168-221)||(23443466-23443519)
chr7 (168-221)||(23457319-23457372)
chr7 (270-319)||(23475742-23475791)
chr7 (165-210)||(25921188-25921233)
chr7 (255-315)||(29340840-29340901)
chr7 (173-221)||(1505670-1505718)
[»] chr5 (11 HSPs)
chr5 (168-305)||(17441350-17441487)
chr5 (168-305)||(17476120-17476257)
chr5 (159-316)||(41048648-41048805)
chr5 (164-221)||(17476085-17476142)
chr5 (168-305)||(7148294-7148431)
chr5 (168-221)||(7148409-7148462)
chr5 (204-275)||(4420602-4420673)
chr5 (170-248)||(7634880-7634958)
chr5 (61-107)||(17476194-17476240)
chr5 (168-221)||(7172433-7172486)
chr5 (168-221)||(18936632-18936685)
[»] chr3 (4 HSPs)
chr3 (166-301)||(30259621-30259757)
chr3 (159-316)||(6269801-6269958)
chr3 (252-310)||(30259858-30259916)
chr3 (168-221)||(30259733-30259786)
[»] chr4 (9 HSPs)
chr4 (185-295)||(53801475-53801585)
chr4 (168-286)||(12828505-12828624)
chr4 (132-221)||(53801359-53801448)
chr4 (168-274)||(20821699-20821805)
chr4 (267-316)||(26310405-26310454)
chr4 (240-316)||(52073270-52073344)
chr4 (185-221)||(12828491-12828527)
chr4 (173-221)||(20821815-20821863)
chr4 (168-221)||(20821783-20821837)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 183 - 528
Target Start/End: Original strand, 1706770 - 1707115
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgaga 282  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1706770 aggttataacccaacgtgaattaactcgtgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgaga 1706869  T
Q  283 gtgagtgttttttgttgggagaatagcagttttccaagaattatagccaaaatgtaacaaacctaattgaagaggcaatcaaggcaaccaagatataata 382  Q
    |||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1706870 gtgaatcttttttgttgggagaagagcagttttccaagaattatagccaaaatgtaacaaacctaactgaagaggcaatcaaggcaaccaagatataata 1706969  T
Q  383 accaagaatccaagatcatggatccaccattgtccatatcactaacgtaccattaaaatctatgaccttaatttaagaaaaatacaaaaaaccactgttc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  1706970 accaagaatccaagatcatggatccaccattgtccatatcactgacgtaccattaaaatctatgaccttaatttaagaaaaatacaaaaaactactgttg 1707069  T
Q  483 attccactattgtgcacaatacagcaagagtttacatcagtataat 528  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  1707070 attccactattgtgcataatacagcaagagtttacatcagtataat 1707115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1706558 - 1706777
Alignment:
Q  1 aaatagttcaatagttcaaaagccaagaattagaaaaatgctcttctcccaatnnnnnnngttcactctcatacaaactgatcaaaatacatccacgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||       | ||||| |||||||||||||||||||||| |||||||||    
T  1706558 aaatagttcaatagttcaaaagccaagaattagaaaattgctcttctcccaataaaaac-gctcactttcatacaaactgatcaaaatacctccacgtaa 1706656  T
Q  101 gttaactaatgcaggtgttatacccaacacaacttaaatcagattcgttgcattgacgcatcgcacatgagttaactcacaaaggttataacccagcgtg 200  Q
     |||||||||||||||||||||||||| ||||||||| |||  |||| | ||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  1706657 attaactaatgcaggtgttatacccaatacaacttaagtcacgttcgctacattggcgcatcgcatatgagttaactcactaaggttataacccagcgtg 1706756  T
Q  201 agttaactcatgtaggttata 221  Q
    | |||||||||||||||||||    
T  1706757 aattaactcatgtaggttata 1706777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 34448393 - 34448526
Alignment:
Q  183 aggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgag 281  Q
    |||||||||||| || |||||| ||||||||| ||| |||||||| |||||| ||| |||| |||| ||||||| ||||| |||| ||||||| |||| |    
T  34448393 aggttataaccccagtgtgagtcaactcatgtcggtcatacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatggg 34448492  T
Q  282 agtgagtgttttttgttgggagaatagcagtttt 315  Q
     |||||||||||||||| |||||| |||| ||||    
T  34448493 cgtgagtgttttttgtttggagaagagcaatttt 34448526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 316
Target Start/End: Complemental strand, 5449635 - 5449485
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtgg-agggtactttg 266  Q
    ||||||||||||   |||||||||||||||||||||||||||| | | |||||||||||| || |||| | ||| |||||||||| || |||| | ||||    
T  5449635 tgagttaactcatgtaggttataacccagcgtgagttaactcacgcaagttatacttcaatttcccgagcgtgaattaactcacgcggaagggcattttg 5449536  T
Q  267 atcagtttatatgagagtgagtg-ttttttgttgggagaatagcagttttc 316  Q
     ||||||| |||| ||||||  | ||||||||| |||||| |||| |||||    
T  5449535 gtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttc 5449485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 5451180 - 5451067
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtgg-agggtactttgatcagtttatatgag 281  Q
    |||||||||||||||||||||||||||| | | ||||||||||| ||| |||| | ||| |||||||||| || |||| | |||||||||||| |||| |    
T  5451180 aggttataacccagcgtgagttaactcacgcaagttatacttcagctttccgagcgtgaattaactcacgcggaagggcattttgatcagtttgtatggg 5451081  T
Q  282 agtgagtgtttttt 295  Q
    |||||  |||||||    
T  5451080 agtgaacgtttttt 5451067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 34396935 - 34397066
Alignment:
Q  168 tgagttaactcacaaaggttataacc-cagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    ||||||||||||   ||||||||| | ||||||||||||||||| | ||||||||||||| |||| ||| | ||| |||||||||| |  || || |||     
T  34396935 tgagttaactcatgtaggttataatctcagcgtgagttaactcacgcaggttatacttcagcttatcgagcgtgaattaactcacgcg--ggatatttta 34397032  T
Q  267 atcagtttatatgagagtgagtgttttttgttgg 300  Q
     ||||||| ||||||| |||| ||||| ||||||    
T  34397033 gtcagtttgtatgagaatgagcgttttatgttgg 34397066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 34448364 - 34448400
Alignment:
Q  185 gttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  34448364 gttataacccagcgtgagttaagtcatgcaggttata 34448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 159 - 298
Target Start/End: Complemental strand, 4865612 - 4865474
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagg 258  Q
    |||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||    
T  4865612 catcccacatgagttaactcaagtaggttataacccagcgtgagttaactcatgtaggttatacttcagcttaccaaacgtgagttaactcacgtgg-gg 4865514  T
Q  259 gtactttgatcagtttatatgagagtgagtgttttttgtt 298  Q
    ||| |||| | ||||| |||||||||||  ||||||||||    
T  4865513 gtattttggtaagtttgtatgagagtgaacgttttttgtt 4865474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 37828633 - 37828781
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttga 267  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||| ||||| ||||     
T  37828633 tgagttaactcatgtaggttataacccagcgtgagttaactcatgtaggttatatttcagcttaccgagcgtgagttaactcacgtggggggtattttgg 37828732  T
Q  268 tcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    | ||||| |||  |||||| |||||||||| ||||||| |||| |||||    
T  37828733 taagtttgtataggagtgaatgttttttgtcgggagaagagcaattttc 37828781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 25557969 - 25557836
Alignment:
Q  184 ggttataa-cccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgaga 282  Q
    |||||||| |||| |||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||| | ||| |||| ||||||| |||| ||    
T  25557969 ggttataagcccaacgtgagttaactcatgtaggttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatggga 25557870  T
Q  283 gtgagtg-ttttttgttgggagaatagcagtttt 315  Q
    ||||| | ||||||||||| |||| |||| ||||    
T  25557869 gtgagcgtttttttgttggaagaagagcaatttt 25557836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 34887957 - 34887885
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtgg 255  Q
    ||||||||||  |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  34887957 aggttataacttagcgtgagttaactcatgtaggttatacttcagcttatcgaacgtgaattaactcacgtgg 34887885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 284
Target Start/End: Complemental strand, 29193297 - 29193172
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataacccag-cgtgagttaactcat-gtaggttatacttcaacttaccgaacatgagttaactcacgtgga 256  Q
    |||| |||||||||||| ||||  |||||||||||  | |||||||||| |||| | |||||||||||||||||||  ||| ||||||||||||||||      
T  29193297 catcccacatgagttaagtcacgtaggttataacctcgacgtgagttaattcattgaaggttatacttcaacttactaaacgtgagttaactcacgtg-- 29193200  T
Q  257 gggtactttgatcagtttatatgagagt 284  Q
     |||| |||||||||||| |||||||||    
T  29193199 aggtattttgatcagtttgtatgagagt 29193172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 37828570 - 37828623
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  37828570 tgagttaactcacacaggttataacctagcgtgagttaactcatgtagcttata 37828623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 23495171 - 23495088
Alignment:
Q  164 cacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcac 251  Q
    |||||||||||||||||  ||||    ||||||||||| |||||||| |||| |||||||||||||||  |||||||| |||||||||    
T  23495171 cacatgagttaactcacgtaggt----acccagcgtgaattaactcacgtagattatacttcaacttattgaacatgacttaactcac 23495088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 29667702 - 29667569
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgaga 282  Q
    |||||||| || ||||||||||||| |  |||||||||| |||| |||||||| | |||||||||||||  ||| |||| |||  | ||||| |||| ||    
T  29667702 aggttatatcctagcgtgagttaaccccagtaggttatatttcagcttaccgagcgtgagttaactcacacggaaggtatttttgttagtttgtatggga 29667603  T
Q  283 gtgagtgttttttgttgggagaatagcagttttc 316  Q
    ||||  | ||||| ||||| ||| ||||||||||    
T  29667602 gtgaacgatttttattgggtgaagagcagttttc 29667569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 37828522 - 37828444
Alignment:
Q  239 tgagttaactcacgtggagggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttcca 318  Q
    |||||||||||||| | |||||| |||| ||||||| |||| ||||||  ||||||||||||||||| |||| |||||||    
T  37828522 tgagttaactcacgcg-agggtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttcca 37828444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 41104735 - 41104798
Alignment:
Q  187 tataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactca 250  Q
    |||||||||||| ||||||| |||||||||||||| || |  ||||||| ||||||||||||||    
T  41104735 tataacccagcgcgagttaagtcatgtaggttatatttaagtttaccgagcatgagttaactca 41104798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 37828601 - 37828655
Alignment:
Q  168 tgagttaactcacaaaggttataa-cccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||||||   || |||||| ||||||||||||||||||||||||||||||    
T  37828601 tgagttaactcatgtagcttataatcccagcgtgagttaactcatgtaggttata 37828655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 23495215 - 23495287
Alignment:
Q  238 atgagttaactcacgtggagggtactttgatcagtttatatgaga-gtgagtgttttttgttgggagaatagca 310  Q
    |||| ||||||||||||||||||| ||||||| |||| ||| ||| ||| | ||||||||||||||||| ||||    
T  23495215 atgaattaactcacgtggagggtattttgatccgtttgtat-agatgtgtgcgttttttgttgggagaagagca 23495287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 42175219 - 42175344
Alignment:
Q  195 agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgagtgttttt 294  Q
    |||||||||||| | |||||||||||| |||| |||||||| | |||||||||||||||||||| || || |||| |||| |||| ||||||||||||||    
T  42175219 agcgtgagttaaattatgtaggttatatttcagcttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttt 42175318  T
Q  295 tgttgggagaatagcagttttccaag 320  Q
    ||||||||||| |||| |||||||||    
T  42175319 tgttgggagaagagcaattttccaag 42175344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 27631134 - 27631011
Alignment:
Q  183 aggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgag 281  Q
    |||||||||||| ||||||| |||||||||||| |||||||| || |||||||||| |||||||||||||||||   ||  |||  |||||||||||| |    
T  27631134 aggttataaccccagcgtgaattaactcatgtaagttatactccagcttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatggg 27631035  T
Q  282 agtgagtgttttttgttgggagaa 305  Q
    |||||| |||||||||||||||||    
T  27631034 agtgagcgttttttgttgggagaa 27631011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 29861615 - 29861700
Alignment:
Q  165 acatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacg 252  Q
    ||||||||||||||| |  |||||||||| |||||||||||||| ||||| |||||| |||| |||||||| ||||||||||||||||    
T  29861615 acatgagttaactcata--ggttataacctagcgtgagttaactaatgtatgttatatttcagcttaccgagcatgagttaactcacg 29861700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 29861555 - 29861608
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  29861555 tgagttaactcacgcaggttataacccagcgtgagttaactcatgtaggttata 29861608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 30892087 - 30891957
Alignment:
Q  185 gttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagt 284  Q
    |||||||  ||||||||||||| ||| | | |||||||| || |||||| ||| |||| |||||||||| |||| || |||| ||||||| ||||| |||    
T  30892087 gttataattcagcgtgagttaattcacgcaagttatactccagcttaccaaacgtgagctaactcacgt-gaggttattttggtcagtttgtatgaaagt 30891989  T
Q  285 gagtgttttttgttgggagaatagcagttttc 316  Q
    ||||  ||||||||||| ||| |||| |||||    
T  30891988 gagtaatttttgttgggcgaagagcaattttc 30891957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 30892198 - 30892145
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| ||||||    
T  30892198 tgagttaactcacgtaggttataacctagcgtgagttaactcatgtatgttata 30892145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 51249296 - 51249167
Alignment:
Q  187 tataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtga 286  Q
    ||||| |||||  |||||||| ||||||||||||| || | |||| | | | |||||||||||||| | ||| || |||  ||||||||||||||||||     
T  51249296 tataatccagcaagagttaacacatgtaggttatattttagcttatcaagcgtgagttaactcacgcgaaggatattttagtcagtttatatgagagtgc 51249197  T
Q  287 gtgttttttgttgggagaatagcagttttc 316  Q
      || |||||||||||||| |||| |||||    
T  51249196 acgtcttttgttgggagaagagcaattttc 51249167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 51249380 - 51249327
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||||| || || |||||| |||||||||||||||||||||||||||||    
T  51249380 tgagttaactcgcatagattataatccagcgtgagttaactcatgtaggttata 51249327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 30892135 - 30892077
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttca 226  Q
    ||||||||||||   ||||||||||||||||| |||||||||||||| |||||| ||||    
T  30892135 tgagttaactcatgtaggttataacccagcgtaagttaactcatgtaagttataattca 30892077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 628718 - 628783
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaact 248  Q
    ||||||||  ||| |||| ||||||||| |||||||||| |||  |||||||||||||||||||||    
T  628718 aggttatagtccaacgtgtgttaactcacgtaggttatatttctgcttaccgaacatgagttaact 628783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 30892167 - 30892113
Alignment:
Q  168 tgagttaactcacaaaggttataaccca-gcgtgagttaactcatgtaggttata 221  Q
    ||||||||||||   | ||||||||||| ||||||||||||||||||||||||||    
T  30892167 tgagttaactcatgtatgttataacccaagcgtgagttaactcatgtaggttata 30892113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 14614443 - 14614399
Alignment:
Q  167 atgagttaactcacaaaggttataa-cccagcgtgagttaactca 210  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||    
T  14614443 atgagttaactcacgcaggttataaacccagcgtgagttaactca 14614399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 1410636 - 1410793
Alignment:
Q  168 tgagttaactcacaaaggttataacc-cagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    |||||||||| |  |||||||||| | |||||||| ||||||||||||| ||||| ||||  |||||||||||||||||||||||||||| |||| ||||    
T  1410636 tgagttaactaatgaaggttataaacacagcgtgaattaactcatgtagtttataattcagtttaccgaacatgagttaactcacgtgga-ggtattttg 1410734  T
Q  267 atcagtttatatgagagtgagtgttttttgttgggagaatagcagttttccaagaattat 326  Q
    || ||||||||||  |||||||||||||| ||||||||| |||| ||||| |||| ||||    
T  1410735 attagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttctaagatttat 1410793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 1410564 - 1410626
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||| ||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  1410564 catctcacgtgagttaactcacatagattataacccagcgtgagttagctcatgtaggttata 1410626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 8128886 - 8128941
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatact 223  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||| || ||||||    
T  8128886 tgagttaactcacataggttataagtcagcatgagttaactcatgttggatatact 8128941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 13706140 - 13706208
Alignment:
Q  164 cacatgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaactta 231  Q
    ||||||||||||||||   |||||||||||| || || ||||||||||||||| ||||| |||| ||||    
T  13706140 cacatgagttaactcatgcaggttataaccccagtgtaagttaactcatgtagattatatttcagctta 13706208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 23475053 - 23474940
Alignment:
Q  192 cccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgagtgtt 291  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||| | | ||| |||| ||| ||| |||    
T  23475053 cccagcatgagttaactcatgtaggttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgtt 23474954  T
Q  292 ttttgttgggagaa 305  Q
    ||||||||||||||    
T  23474953 ttttgttgggagaa 23474940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 23533393 - 23533280
Alignment:
Q  192 cccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgagtgtt 291  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||| |||| | ||||| |||| |||||||  ||    
T  23533393 cccagcatgagttaactcatgtaggttatactccaacttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcatt 23533294  T
Q  292 ttttgttgggagaa 305  Q
    ||||||||||||||    
T  23533293 ttttgttgggagaa 23533280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 186 - 305
Target Start/End: Original strand, 23457368 - 23457488
Alignment:
Q  186 ttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagt 284  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||| |||| |||| | ||||| |||| ||||    
T  23457368 ttataacccgagcatgagttaactcatgtaggttatactccaacttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagt 23457467  T
Q  285 gagtgttttttgttgggagaa 305  Q
    ||| |||||||||| ||||||    
T  23457468 gagcgttttttgtttggagaa 23457488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 23443470 - 23443346
Alignment:
Q  186 ttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactc----acgtggagggtactttgatcagtttatatga 280  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||| ||||| ||| |||||||||||    |||||||||||| |||||| ||||| ||||     
T  23443470 ttataacccgagcatgagttaactcatgtaggttatactccaatttaccaaacgtgagttaactcacgtacgtggagggtattttgataagtttttatgg 23443371  T
Q  281 gagtgagtgttttttgttgggagaa 305  Q
    ||||||| |||||||||||||||||    
T  23443370 gagtgagcgttttttgttgggagaa 23443346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 168 - 317
Target Start/End: Complemental strand, 1505692 - 1505542
Alignment:
Q  168 tgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    ||||||||||||   ||||||||| || || |||||||||| |||| ||||||||||||| |||| ||||  ||||||||||||| ||||||||| ||||    
T  1505692 tgagttaactcatgtaggttataatcctagtgtgagttaacccatgcaggttatacttcagcttatcgaatgtgagttaactcacatggagggtattttg 1505593  T
Q  267 atcagtttatatgagagtgagtgttttttgttgggagaatagcagttttcc 317  Q
     || ||||||||| |||| |  ||||||||||||||||| |||| ||||||    
T  1505592 gtcggtttatatgggagtaaacgttttttgttgggagaagagcaattttcc 1505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 316
Target Start/End: Original strand, 9880930 - 9881087
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggag 257  Q
    |||| ||| |||||||||||||| ||||||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| ||  | |||| |    
T  9880930 catctcacgtgagttaactcacataggttataatcctagcgtgagttaactcatgtaagttagactacaacttaccgaacatgagttcacatatgtgggg 9881029  T
Q  258 ggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    |||| |||| || |||| |||| |||||||    |||||||||||||| |||| |||||    
T  9881030 ggtattttgttcggtttgtatgggagtgag-aacttttgttgggagaagagcaattttc 9881087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 2169146 - 2169199
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  2169146 tgagttaaatcacataggttataacccagcatgagttaactcatgtaggttata 2169199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 2169175 - 2169322
Alignment:
Q  166 catgagttaactcacaaaggttataacc-cagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactt 264  Q
    ||||||||||||||   ||||||||||| ||| ||||||||||||||  ||||||||||||    ||  |||| | |||||||||||| ||   ||| ||    
T  2169175 catgagttaactcatgtaggttataacctcagtgtgagttaactcatacaggttatacttcgttatattgaacgtaagttaactcacgcgg---gtattt 2169271  T
Q  265 tgatcagtttatatgagagtgagtgttttttgttgggagaatagcagtttt 315  Q
    ||||| |||| |||| ||||||| ||||||||||||||||| |||| ||||    
T  2169272 tgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 42602667 - 42602532
Alignment:
Q  183 aggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtg-gagggtactttgatcagtttatatgag 281  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||  ||| | | | ||||||||||||| ||  |  ||| ||||||| |||| ||||||    
T  42602667 aggttataactcagcgtgagttaactcatgtatgttatatttcagtttatcaatcgtgagttaactcacatgaaaaagtattttgatcggtttctatgag 42602568  T
Q  282 agtgagtgttttttgttgggagaatagcagttttcc 317  Q
    |||||    |||||||| |||||| |||| ||||||    
T  42602567 agtgaacaatttttgttaggagaagagcaattttcc 42602532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 23534134 - 23534204
Alignment:
Q  249 cacgtggagggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttccaa 319  Q
    ||||||| ||||| |||  | ||||| ||||||||||||  |||||||||||||||| |||| ||||||||    
T  23534134 cacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttccaa 23534204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 23443519 - 23443466
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||   |||||||||||| ||||||||| ||||||||| |||||    
T  23443519 tgagttaactcacgtgggttataacccaacgtgagttagctcatgtagattata 23443466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23457319 - 23457372
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||   |||||||||||| ||||||||| ||||||||| |||||    
T  23457319 tgagttaactcacgtgggttataacccaacgtgagttagctcatgtagattata 23457372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 23475742 - 23475791
Alignment:
Q  270 agtttatatgagagtgagtgttttttgttgggagaatagcagttttccaa 319  Q
    ||||| ||||||||||||  |||||||||||||||| |||| ||||||||    
T  23475742 agtttgtatgagagtgagcattttttgttgggagaagagcaattttccaa 23475791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 25921188 - 25921233
Alignment:
Q  165 acatgagttaactcacaaaggttataacccagcgtgagttaactca 210  Q
    |||||| |||||||| | ||||||||||| ||||||||||||||||    
T  25921188 acatgaattaactcatataggttataaccgagcgtgagttaactca 25921233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 29340840 - 29340901
Alignment:
Q  255 gagggtactttgatcagtttatatgagagtg-agtgttttttgttgggagaatagcagtttt 315  Q
    ||||||| ||||||||||||||||||||||| | | ||||||| |||||||| |||| ||||    
T  29340840 gagggtattttgatcagtttatatgagagtgaacttttttttggtgggagaagagcaatttt 29340901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1505718 - 1505670
Alignment:
Q  173 taactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||  |||||||||  || |||||||||||||||||||||||||    
T  1505718 taactcacgtaggttataattcaacgtgagttaactcatgtaggttata 1505670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 168 - 305
Target Start/End: Original strand, 17441350 - 17441487
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttga 267  Q
    ||||||||||||   ||||||||||  ||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||| ||||| |||      
T  17441350 tgagttaactcatgcaggttataacatagcgtgagttaactcatgtaggttatatttcagcttaccgagcgtgagttaactcacgtggtgggtattttag 17441449  T
Q  268 tcagtttatatgagagtgagtgttttttgttgggagaa 305  Q
    ||| ||| | | |||||||| |||||||||||||||||    
T  17441450 tcaatttgtgtaagagtgagcgttttttgttgggagaa 17441487  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 168 - 305
Target Start/End: Original strand, 17476120 - 17476257
Alignment:
Q  168 tgagttaactcacaaaggttataacc-cagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    ||||||||||||   ||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||  ||||||||||||||||| |||| ||||    
T  17476120 tgagttaactcatgtaggttataacctcaacgtgagttaattcatgtaggttatactttagcttaccgaacgcgagttaactcacgtgga-ggtattttg 17476218  T
Q  267 atcagtttatatgagagtgagtgttttttgttgggagaa 305  Q
     ||||||| |||||||| ||  |||||||||||||||||    
T  17476219 gtcagtttgtatgagagcgaacgttttttgttgggagaa 17476257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 41048805 - 41048648
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggag 257  Q
    |||| ||| ||||||||||||    ||||||||||| | ||||||||||||||| || ||||||||||| |||||||||||| ||||| ||||| | | |    
T  41048805 catcccacgtgagttaactcatgtcggttataaccccaacgtgagttaactcatatatgttatacttcagcttaccgaacataagttagctcacatag-g 41048707  T
Q  258 ggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    |||| |||||  ||||| |||| ||||| | ||||||||||||||||| |||| |||||    
T  41048706 ggtattttgactagtttgtatgggagtgtgcgttttttgttgggagaagagcaattttc 41048648  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 17476085 - 17476142
Alignment:
Q  164 cacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  17476085 cacatgagttaactcacgtaggttataatccagcgtgagttaactcatgtaggttata 17476142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 7148431 - 7148294
Alignment:
Q  168 tgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    ||||||||||||   |||||||||||| |||||||||||||| |  ||||||||| |||| | || ||| | ||||||||||||||| | | ||| ||||    
T  7148431 tgagttaactcatgtaggttataaccccagcgtgagttaacttaaataggttatatttcagcctatcgagcgtgagttaactcacgtagggagtattttg 7148332  T
Q  267 atcagtttatatgagagtgagtgttttttgttgggagaa 305  Q
     ||||||| |||| |||||||  ||||||||||||||||    
T  7148331 gtcagtttgtatgggagtgag-cttttttgttgggagaa 7148294  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 7148462 - 7148409
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  7148462 tgagttaactcacgtaggttataactcagcgtgagttaactcatgtaggttata 7148409  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 4420602 - 4420673
Alignment:
Q  204 taactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagttta 275  Q
    |||||||||||||||||||||||  ||||| ||| |||||||| |||||||||  ||| |||| ||||||||    
T  4420602 taactcatgtaggttatacttcagtttaccaaacgtgagttaattcacgtggaaagtattttggtcagttta 4420673  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 7634880 - 7634958
Alignment:
Q  170 agttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaact 248  Q
    ||||| |||||  ||||||| || ||||||||||||| |||||||||||||| || | |||||||| | ||||||||||    
T  7634880 agttacctcacgcaggttatgactcagcgtgagttaattcatgtaggttatattttagcttaccgagcctgagttaact 7634958  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 17476240 - 17476194
Alignment:
Q  61 gttcactctcatacaaactgatcaaaatacatccacgtaagttaact 107  Q
    |||| |||||||||||||||| |||||||| ||||||| ||||||||    
T  17476240 gttcgctctcatacaaactgaccaaaatacctccacgtgagttaact 17476194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 7172433 - 7172486
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||| ||||  | |||||||| ||||||||||||||| ||||||||||||    
T  7172433 tgagttaattcacgcatgttataacacagcgtgagttaacttatgtaggttata 7172486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 18936685 - 18936632
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||||||||||  |||||||||| || |||||||||||| || |||||||||    
T  18936685 tgagttaactcacgtaggttataacacatcgtgagttaacttatataggttata 18936632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 30259757 - 30259621
Alignment:
Q  166 catgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactt 264  Q
    |||||||||||||    |||||||||||| | |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||  | ||| ||    
T  30259757 catgagttaactcttgtaggttataaccccaacgtgagttaactcatgtaggttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattt 30259658  T
Q  265 tgatcagtttatatgagagtgagtgttttttgttggg 301  Q
    || ||||||| ||||| |||||  |||||||||||||    
T  30259657 tggtcagtttgtatgaaagtgatcgttttttgttggg 30259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 316
Target Start/End: Original strand, 6269801 - 6269958
Alignment:
Q  159 catcgcacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagg 258  Q
    |||| ||| |||||||||||||  || |||||| | | ||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| |  | |    
T  6269801 catctcacgtgagttaactcacgtagattataatctaacgtgagttaactcatgtagattatatttcaacttaccgaacttaagttaactcacataaaag 6269900  T
Q  259 gtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    ||| |||  | |||||  ||||||||    ||||||||||||||||| || |||||||    
T  6269901 gtattttcgttagtttgcatgagagttgacgttttttgttgggagaagagtagttttc 6269958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 30259858 - 30259916
Alignment:
Q  252 gtggagggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagca 310  Q
    |||| ||||| |||||||||||| |||| ||||||| ||||||||||||||||| ||||    
T  30259858 gtggtgggtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagca 30259916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 30259786 - 30259733
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||||||   |||| |||||||||| ||||||||||| |||||||||||    
T  30259786 tgagttaactcatgtaggtcataacccagcatgagttaactcttgtaggttata 30259733  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 53801475 - 53801585
Alignment:
Q  185 gttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagt 284  Q
    |||||||| ||||||||||||||   |||||||||||||||| |||| ||||| ||||||||||||||||||| ||| |||| ||||||| | |||||||    
T  53801475 gttataactcagcgtgagttaacatttgtaggttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagt 53801574  T
Q  285 gagtgtttttt 295  Q
    ||  |||||||    
T  53801575 gaacgtttttt 53801585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 12828505 - 12828624
Alignment:
Q  168 tgagttaactcacaaaggttataaccc-agcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttg 266  Q
    ||||||||||||   |||||||||||| |  |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||   | || ||||    
T  12828505 tgagttaactcatgtaggttataaccccattgtgagttaacccatgtaggttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttg 12828604  T
Q  267 atcagtttatatgagagtga 286  Q
     ||||||| |||||||||||    
T  12828605 gtcagtttgtatgagagtga 12828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 53801359 - 53801448
Alignment:
Q  132 acttaaatcagattcgttgcattgacgcatcgcacatgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    |||||| ||| ||||| | ||||||| | ||  |||||||||||||| |  | ||||||||||| |||||||||||||||||||||||||    
T  53801359 acttaagtcacattcgctacattgacacgtcctacatgagttaactctcgtatgttataacccaacgtgagttaactcatgtaggttata 53801448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 20821805 - 20821699
Alignment:
Q  168 tgagttaactcacaaaggttataacccagcgtgagttaactcatgtaggttatacttcaacttaccgaacatgagttaactcacgtggagggtactttga 267  Q
    ||||||||||||   ||||||||||  ||||| ||||||||||   |  |||||||||| |||||| |||||||||||| |||||| || | || |||||    
T  20821805 tgagttaactcatgtaggttataactaagcgtaagttaactcacacatattatacttcagcttaccaaacatgagttaattcacgtagaagatattttga 20821706  T
Q  268 tcagttt 274  Q
    |||||||    
T  20821705 tcagttt 20821699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 26310405 - 26310454
Alignment:
Q  267 atcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    |||||||| ||||| |||||||||||||||||||||||| |||| |||||    
T  26310405 atcagtttgtatgaaagtgagtgttttttgttgggagaaaagcaattttc 26310454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 52073344 - 52073270
Alignment:
Q  240 gagttaactcacgtggagggtactttgatcagtttatatgagagtgagtgttttttgttgggagaatagcagttttc 316  Q
    ||||||||| ||||||  |||| ||||| | ||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  52073344 gagttaacttacgtgg--ggtattttgaaccgtttatatgggagtgtgtgttttttgttgggagaagagcaattttc 52073270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 12828491 - 12828527
Alignment:
Q  185 gttataacccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12828491 gttataacccaacgtgagttaactcatgtaggttata 12828527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20821863 - 20821815
Alignment:
Q  173 taactcacaaaggttataacccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||  ||||||||| ||| |||||||||||||||||||||||||    
T  20821863 taactcacttaggttataatccaacgtgagttaactcatgtaggttata 20821815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 20821837 - 20821783
Alignment:
Q  168 tgagttaactcacaaaggttataac-ccagcgtgagttaactcatgtaggttata 221  Q
    ||||||||||||   |||||||||| || ||||||||||||||||||||||||||    
T  20821837 tgagttaactcatgtaggttataacaccggcgtgagttaactcatgtaggttata 20821783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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