View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_low_28 (Length: 300)

Name: NF19922_low_28
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_low_28
NF19922_low_28
[»] chr3 (12 HSPs)
chr3 (25-125)||(7820605-7820705)
chr3 (196-291)||(7820767-7820862)
chr3 (19-96)||(39287660-39287737)
chr3 (18-96)||(29536922-29536999)
chr3 (18-96)||(47854696-47854773)
chr3 (19-89)||(48034211-48034281)
chr3 (207-288)||(35634408-35634488)
chr3 (19-95)||(52293352-52293428)
chr3 (19-84)||(32973350-32973415)
chr3 (19-96)||(48826023-48826101)
chr3 (27-89)||(53048872-53048934)
chr3 (40-122)||(33149727-33149809)
[»] chr1 (14 HSPs)
chr1 (19-124)||(14391217-14391322)
chr1 (196-290)||(14391389-14391483)
chr1 (22-124)||(20953503-20953605)
chr1 (19-90)||(34531874-34531945)
chr1 (19-89)||(35684038-35684108)
chr1 (22-124)||(42248107-42248209)
chr1 (18-95)||(25889322-25889399)
chr1 (19-90)||(48934944-48935015)
chr1 (207-288)||(42247944-42248024)
chr1 (19-77)||(48973409-48973467)
chr1 (66-122)||(6709931-6709987)
chr1 (66-125)||(6710620-6710679)
chr1 (27-89)||(2237814-2237875)
chr1 (204-275)||(8562087-8562159)
[»] chr4 (14 HSPs)
chr4 (19-125)||(15446466-15446572)
chr4 (18-124)||(53150611-53150717)
chr4 (196-291)||(15446305-15446400)
chr4 (19-95)||(526548-526624)
chr4 (206-291)||(30597203-30597288)
chr4 (18-87)||(29834270-29834339)
chr4 (19-95)||(936428-936504)
chr4 (18-95)||(29833581-29833660)
chr4 (18-124)||(53400394-53400500)
chr4 (38-111)||(23153062-23153135)
chr4 (66-125)||(47606395-47606454)
chr4 (51-95)||(30671904-30671948)
chr4 (196-243)||(53400564-53400612)
chr4 (199-270)||(53150758-53150820)
[»] chr7 (14 HSPs)
chr7 (19-96)||(43935969-43936046)
chr7 (22-124)||(48754208-48754310)
chr7 (18-95)||(30222855-30222932)
chr7 (19-95)||(41126450-41126526)
chr7 (18-95)||(30223806-30223883)
chr7 (19-96)||(36673664-36673741)
chr7 (19-95)||(41618328-41618404)
chr7 (18-124)||(7347020-7347126)
chr7 (207-288)||(48754396-48754476)
chr7 (18-96)||(47163361-47163436)
chr7 (19-96)||(2903875-2903952)
chr7 (24-68)||(43935407-43935451)
chr7 (57-95)||(34557788-34557826)
chr7 (196-243)||(7346912-7346960)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-95)||(458298-458375)
[»] chr5 (6 HSPs)
chr5 (19-96)||(20988901-20988978)
chr5 (19-96)||(42979649-42979726)
chr5 (21-96)||(42980547-42980622)
chr5 (18-89)||(4567160-4567230)
chr5 (18-89)||(15510100-15510170)
chr5 (51-96)||(15613729-15613774)
[»] chr2 (4 HSPs)
chr2 (18-90)||(41312710-41312782)
chr2 (19-90)||(3665435-3665506)
chr2 (19-95)||(33836980-33837056)
chr2 (19-87)||(2305751-2305818)
[»] chr6 (3 HSPs)
chr6 (21-96)||(19368346-19368421)
chr6 (59-125)||(9101584-9101650)
chr6 (47-111)||(17359050-17359114)
[»] scaffold0177 (1 HSPs)
scaffold0177 (19-89)||(1965-2035)
[»] chr8 (4 HSPs)
chr8 (22-124)||(45385596-45385698)
chr8 (19-95)||(6843937-6844013)
chr8 (207-288)||(45385428-45385508)
chr8 (18-125)||(38665654-38665768)
[»] scaffold0012 (2 HSPs)
scaffold0012 (66-122)||(242706-242762)
scaffold0012 (66-125)||(243383-243442)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 7820605 - 7820705
Alignment:
Q  25 acatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatac 124  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7820605 acatatgatcatttctatttttcttgattttcttaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatac 7820704  T
Q  125 c 125  Q
    |    
T  7820705 c 7820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 7820767 - 7820862
Alignment:
Q  196 tcatcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttcttc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  7820767 tcatcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaataacaaataacaatttcttcttc 7820862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 39287660 - 39287737
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  39287660 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatctt 39287737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 29536922 - 29536999
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||||    
T  29536922 actcacaacatatgatcatttcaatttttttt-attttcctaaaaataaaaatttaaaatcaccatcaatcttcatctt 29536999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 47854696 - 47854773
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  47854696 actcacaacatatgatcatttctatttctttt-attttcctaaaaataaaaatttaaaatcaccatcaatcttcatctt 47854773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 48034211 - 48034281
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48034211 ctcacaacatacaatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatct 48034281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 35634488 - 35634408
Alignment:
Q  207 ttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttc 288  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||    
T  35634488 ttttctcaaaacaattccaacaagatattcaagattt-aagtaaatcctctcttttcaacaacaacaaacaacaatttcttc 35634408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 52293428 - 52293352
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  52293428 ctcacaacatataatcatttctattcttcttgattttcctaaaattataaatttaaaatcaccatcaatcttcatct 52293352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 32973350 - 32973415
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatc 84  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32973350 ctcataacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatc 32973415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 48826023 - 48826101
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttg-attttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||| ||||||||||||||| ||  ||||||||||||||| |||||| ||||||| ||||||||| |||||    
T  48826023 ctcacaacatataatcatttctattttttttttattttcctaaaaatataaatttgaaatcactatcaatcttcatctt 48826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 53048934 - 53048872
Alignment:
Q  27 atatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    |||| ||||||||||||||| || |||||||||||| || |||||||||||||||||||||||    
T  53048934 atataatcatttctatttttttttattttcctaaaattataaatttaaaatcaccatcaatct 53048872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 33149727 - 33149809
Alignment:
Q  40 tatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcat 122  Q
    ||||| |||| | |||||||||| || ||||| ||||| ||||  |||||| |||||||||||||||||||| ||||||||||    
T  33149727 tatttgtcttaaatttcctaaaactacaaattaaaaattaccaataatcttcatcttcttccctcttcatcttccaacttcat 33149809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 14391217 - 14391322
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||    
T  14391217 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaattgaaattcaccatcaatcttcatcttcttccctcttaatctcccaact 14391316  T
Q  119 tcatac 124  Q
    ||||||    
T  14391317 tcatac 14391322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 14391389 - 14391483
Alignment:
Q  196 tcatcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  ||||||||||    
T  14391389 tcatcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctattttcaacagcaacaaacaacaatttcttctt 14391483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 20953503 - 20953605
Alignment:
Q  22 acaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttca 121  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||||||| |||||||    
T  20953503 acaacatatgataatttatatttttcttaattttcctaaaaataaaaattaaaaatcactataaatcttcatcttctttcctcttcatctcctaacttca 20953602  T
Q  122 tac 124  Q
    |||    
T  20953603 tac 20953605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 34531874 - 34531945
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctt 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34531874 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatctt 34531945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 35684108 - 35684038
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35684108 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatct 35684038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 42248209 - 42248107
Alignment:
Q  22 acaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttca 121  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||| |||||||| ||| || ||||||||||| ||||||||||||| || ||||    
T  42248209 acaacatatgataatttctatttttcttaattttcctgaaaataaaaattaaaaatcactatctatatttatcttctttcctcttcatctcctaaattca 42248110  T
Q  122 tac 124  Q
    |||    
T  42248109 tac 42248107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 25889399 - 25889322
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||    
T  25889399 actcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaaccaccatcgatcttcatct 25889322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 48935015 - 48934944
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctt 90  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  48935015 ctcacaacatataatcatttttatttttcttgattttcccaaaaatataaatttaaaatcaccatcaatctt 48934944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 42248024 - 42247944
Alignment:
Q  207 ttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttc 288  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||  ||||||||    
T  42248024 ttttctcaaaacaattccaacaaaatattcaaga-tttaagtaaatcatctcttttcaacaacaacaaacaacaatttcttc 42247944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 48973409 - 48973467
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaat 77  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  48973409 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaat 48973467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 6709931 - 6709987
Alignment:
Q  66 aaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcat 122  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  6709931 aaaattaaaaatcaccaacaatcttcatcttcttccctcttcatctcccaacttcat 6709987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 6710679 - 6710620
Alignment:
Q  66 aaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatacc 125  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||| || | ||||||||||    
T  6710679 aaaattaaaaattaccaacaatcttcatcttcttccctcttcatatctctacttcatacc 6710620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 2237875 - 2237814
Alignment:
Q  27 atatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    |||| ||||||||||||||| ||  | ||||||||| || |||||||||||||||||||||||    
T  2237875 atataatcatttctattttttttt-tcttcctaaaattataaatttaaaatcaccatcaatct 2237814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 8562087 - 8562159
Alignment:
Q  204 catttttctcaaaacaattccaacaa-catattcaagattttaagtaaatcctctcttttcaacaacaacaaa 275  Q
    |||||| ||| ||||||||||||||| |||||||||||| | | |||||| |||| |||| ||||| ||||||    
T  8562087 cattttgctccaaacaattccaacaaccatattcaagatctaaggtaaattctctatttttaacaaaaacaaa 8562159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 15446572 - 15446466
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaact 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  15446572 ctcacaacatatgatcatttctatttttcttgattttcttaaaaataaaaatttaaagtcaccttcaatcttcatcttcttccctcttcatctcccaact 15446473  T
Q  119 tcatacc 125  Q
    || ||||    
T  15446472 tcctacc 15446466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 53150611 - 53150717
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaac 117  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||    
T  53150611 actcacaacatatgataatttatatttttcttgattttcctaaaaataaaaataataaatcaccatcaatctttatcttctttcctcttcatctcctaac 53150710  T
Q  118 ttcatac 124  Q
    |||||||    
T  53150711 ttcatac 53150717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 15446400 - 15446305
Alignment:
Q  196 tcatcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttcttc 291  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  15446400 tcatcatctatttttctcaaaacaattccaacaatatattcaagattttaagtaaatcctctcttttcaacaacaacaaacaacaatttcttcttc 15446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 526624 - 526548
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  526624 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 30597288 - 30597203
Alignment:
Q  206 tttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttcttc 291  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||| |||| ||||||    
T  30597288 tttttctcaaaacaattccaacaacatatttaagatcttaagtaaatcctctcctttcaacaacaacaaacaataatttattcttc 30597203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 29834339 - 29834270
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaat 87  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  29834339 actcacaacatataatcatttttatttttcttgattttcctaaaaatataaatttaaaatcaccatcaat 29834270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 936428 - 936504
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  936428 ctcacaacatataatcatttctattcttattgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 936504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 29833581 - 29833660
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaa--ataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||| ||||    
T  29833581 actcacaacatataatcatttctatttttcttgattttcctaaaaatatataaatttaaaatcaccatcaatcttcatct 29833660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 53400394 - 53400500
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaac 117  Q
    ||||||||||| |||| ||||||||||||| | |||| ||| ||||||||| || | |||||| ||||||||| |||||||| ||||||||||||| |||    
T  53400394 actcacaacatgtgataatttctatttttcctaatttccctcaaaataaaagttaacaatcactatcaatcttcatcttctttcctcttcatctcctaac 53400493  T
Q  118 ttcatac 124  Q
    |||||||    
T  53400494 ttcatac 53400500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 23153135 - 23153062
Alignment:
Q  38 tctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatct 111  Q
    ||||||| |||||| ||||||||||||||||||| |||||||  | ||||||| |||||| | |||||||||||    
T  23153135 tctatttctcttgaatttcctaaaaataaaaattaaaaatcagtaacaatcttcatcttccttcctcttcatct 23153062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 47606454 - 47606395
Alignment:
Q  66 aaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatacc 125  Q
    |||||| |||||||||| ||||||| |||||||||||||||||| || | ||||||||||    
T  47606454 aaaattaaaaatcaccaacaatcttcatcttcttccctcttcatatctctacttcatacc 47606395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 30671948 - 30671904
Alignment:
Q  51 attttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||    
T  30671948 atttttctaaaaatataaatttaaaatcaccatcaatcttcatct 30671904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 53400564 - 53400612
Alignment:
Q  196 tcatcatccatttt-tctcaaaacaattccaacaacatattcaagattt 243  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  53400564 tcatcatccattttttctcaaaacaattccaacaaggtattcaagattt 53400612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 53150758 - 53150820
Alignment:
Q  199 tcatccatttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaaca 270  Q
    ||||||||||||||||||||||||||||         |||||| ||||||||| ||||||||||||||||||    
T  53150758 tcatccatttttctcaaaacaattccaa---------caagatcttaagtaaaccctctcttttcaacaaca 53150820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 43936046 - 43935969
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  43936046 ctcacaacatatgatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatctt 43935969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 48754208 - 48754310
Alignment:
Q  22 acaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttca 121  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||| |||||||| |||||| || |||||||| ||||||||||||| |||||||    
T  48754208 acaacatatgataatttctatttttcttaattttcctgaaaataaaaattaaaaatcactatcaatattcatcttctttcctcttcatctcctaacttca 48754307  T
Q  122 tac 124  Q
    |||    
T  48754308 tac 48754310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 30222855 - 30222932
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  30222855 actcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 30222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 41126450 - 41126526
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  41126450 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 41126526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 30223883 - 30223806
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  30223883 actcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcatcatcaatcttcatct 30223806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 36673741 - 36673664
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  36673741 ctcacaacatataatcatttatatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatctt 36673664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 41618404 - 41618328
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  41618404 ctcacaacatataatcatttctatttttcttgattttcttaaaaatataaatttaaaatcaccatcaatcttcatct 41618328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 7347126 - 7347020
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaac 117  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||||||||| || |  ||||| ||||||||| |||||||| ||||||||||||| |||    
T  7347126 actcacaacatatgataatttctatttttcctaattttcctgaaaataaaagttaaccatcactatcaatcttcatcttctttcctcttcatctcctaac 7347027  T
Q  118 ttcatac 124  Q
    |||||||    
T  7347026 ttcatac 7347020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 48754396 - 48754476
Alignment:
Q  207 ttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttc 288  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||    
T  48754396 ttttctcaaaacaattccaacaagatattcaagattt-aagtaaatcctctcttttcaacaacaacaaacaacaatttcttc 48754476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 47163361 - 47163436
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||    
T  47163361 actcacaacatatgatcatttctattttt-ttaattttcctaaaaataaaaatttaaa--caccatcaatctttatctt 47163436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 2903952 - 2903875
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  2903952 ctcacaacatataatcatttatatttttcttgatttttctaaaaatataaatttaacatcaccatcaatcttcatctt 2903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 43935407 - 43935451
Alignment:
Q  24 aacatatgatcatttctatttttcttgattttcctaaaaataaaa 68  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  43935407 aacatatgatcatttctatttttcttgattttcctgaaaaaaaaa 43935451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 34557788 - 34557826
Alignment:
Q  57 ctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  34557788 ctaaaaatataaatttaaaatcaccatcaatcttcatct 34557826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 7346960 - 7346912
Alignment:
Q  196 tcatcatccattttt-ctcaaaacaattccaacaacatattcaagattt 243  Q
    ||||||||||||||| |||||||||||| ||||||  ||||||||||||    
T  7346960 tcatcatccattttttctcaaaacaattacaacaaggtattcaagattt 7346912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 458375 - 458298
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  458375 actcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 458298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 20988901 - 20988978
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  20988901 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttaatctt 20988978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 42979649 - 42979726
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  42979649 ctcacaacatatgatcatttgtatttttcttgatttccctaaaaataaaaatttaaaatcaccatcaatcttcatctt 42979726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 42980622 - 42980547
Alignment:
Q  21 cacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  42980622 cacaacatatgatcatttatatttttcttgattttcctaaaaataaaaatctaaaatcaccataaatcttcatctt 42980547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4567160 - 4567230
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  4567160 actcacaacatataatcatttctatttt-cttgattttcctaaaaatataaatttaaaatcaccatcaatct 4567230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 15510170 - 15510100
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  15510170 actcacaacatataatcatttctatttt-cttgattttcctaaaaatataaatttaaaatcaccatcaatct 15510100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 15613729 - 15613774
Alignment:
Q  51 attttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||    
T  15613729 attttcctgaaaataaaactttaaaatcaccatcaatcttcatctt 15613774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 41312710 - 41312782
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctt 90  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41312710 actcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatctt 41312782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3665435 - 3665506
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctt 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3665435 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatctt 3665506  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 33836980 - 33837056
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  33836980 ctcacaacatataatcatttctattcttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 33837056  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 2305751 - 2305818
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaat 87  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  2305751 ctcacaacatataatcatttctatttttcttga-tttcctaaaaatataaatttaaaatcaccatcaat 2305818  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 19368421 - 19368346
Alignment:
Q  21 cacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatctt 96  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  19368421 cacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatctt 19368346  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 9101584 - 9101650
Alignment:
Q  59 aaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatacc 125  Q
    ||||||||| ||| ||||||||||  |  ||| ||||||||||||| ||||||||||||||||||||    
T  9101584 aaaaataaatattaaaaatcaccaaaagacttcatcttcttccctcatcatctcccaacttcatacc 9101650  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 17359050 - 17359114
Alignment:
Q  47 cttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatct 111  Q
    ||||| |||||||||||||||| || || ||||| | ||||||| |||||| | |||||||||||    
T  17359050 cttgaatttcctaaaaataaaatttaaatatcactaacaatcttcatcttccttcctcttcatct 17359114  T

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Target: scaffold0177 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1965 - 2035
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatct 89  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1965 ctcacaacatataatcatttctatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatct 2035  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 45385698 - 45385596
Alignment:
Q  22 acaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttca 121  Q
    |||||||||||| ||||||||||||||| ||||| || |||||||||||| |||||||| |||||| || |||||||| ||||||||||||| |||||||    
T  45385698 acaacatatgataatttctatttttcttaatttttctgaaaataaaaattaaaaatcactatcaatattcatcttctttcctcttcatctcctaacttca 45385599  T
Q  122 tac 124  Q
    |||    
T  45385598 tac 45385596  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6843937 - 6844013
Alignment:
Q  19 ctcacaacatatgatcatttctatttttcttgattttcctaaaaataaaaatttaaaatcaccatcaatctttatct 95  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  6843937 ctcacaacatataatcatttgtatttttcttgattttcctaaaaatataaatttaaaatcaccatcaatcttcatct 6844013  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 45385508 - 45385428
Alignment:
Q  207 ttttctcaaaacaattccaacaacatattcaagattttaagtaaatcctctcttttcaacaacaacaaataatgatttcttc 288  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||    
T  45385508 ttttctcaaaacaattccaacaagatattcaagattt-aagtaaatcctctcttttcaacaacaacaaacaacaatttcttc 45385428  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 38665768 - 38665654
Alignment:
Q  18 actcacaacatatgatcatttctatttttcttgattttcct-------aaaaataaaaatttaaaatcaccatcaatctttatcttcttccctcttcatc 110  Q
    ||||||| |||||||| ||||||||||||||||||||||||       |||| |||||||| |||||||||||||||||| |||||| | ||||| ||||    
T  38665768 actcacagcatatgataatttctatttttcttgattttcctaaaattaaaaattaaaaattaaaaatcaccatcaatcttcatcttccttcctctccatc 38665669  T
Q  111 tcccaacttcatacc 125  Q
    ||| |||||||||||    
T  38665668 tcctaacttcatacc 38665654  T

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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 242706 - 242762
Alignment:
Q  66 aaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcat 122  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  242706 aaaattaaaaatcaccaacaatcttcatctttttccctcttcatctcccaacttcat 242762  T

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Target: scaffold0012; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 243442 - 243383
Alignment:
Q  66 aaaatttaaaatcaccatcaatctttatcttcttccctcttcatctcccaacttcatacc 125  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||| || | ||||||||||    
T  243442 aaaattaaaaattaccaacaatcttcatcttcttccctcttcatatctctacttcatacc 243383  T

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