View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_31 (Length: 265)
Name: NF19922_low_31
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_31 |
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| [»] scaffold0224 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 13773 - 14037
Alignment:
| Q |
1 |
gatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagtt |
100 |
Q |
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| T |
13773 |
gatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagtt |
13872 |
T |
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| Q |
101 |
aacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaa |
200 |
Q |
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| T |
13873 |
aacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaa |
13972 |
T |
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| Q |
201 |
cctcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacat |
265 |
Q |
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| T |
13973 |
cttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacat |
14037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 42932998 - 42932734
Alignment:
| Q |
1 |
gatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagtt |
100 |
Q |
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| T |
42932998 |
gatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagtt |
42932899 |
T |
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| Q |
101 |
aacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932898 |
aacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaa |
42932799 |
T |
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| Q |
201 |
cctcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacat |
265 |
Q |
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| T |
42932798 |
cttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacat |
42932734 |
T |
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