View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_32 (Length: 263)
Name: NF19922_low_32
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 3305260 - 3305025
Alignment:
| Q |
16 |
aagaaaggaactaacaaatggacatagctctcttctctacatcatctctcttcgccgaagaagatgatgacgatgacattcataccaagggtactannnn |
115 |
Q |
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| T |
3305260 |
aagaaaggaactaacaaatggacatagctctcttctccacatcatctctcttcgccgaagaagatgatgacgatgacattcataccaagggtactactct |
3305161 |
T |
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| Q |
116 |
nnnnnnnnnn--------gcttgtttcttctttgattcctatgttgacaaattatgtttctgaatgcagatgaggaaaacgctgagactcatgaaaccta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3305160 |
ctctctctctctctctctgcttgtttcttctttgattcctatgttgacaaattatgtttctgaatgcagatgaggaaaacgctgagactcatgaaactta |
3305061 |
T |
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| Q |
208 |
tgttgagaggaagcatcagttccctggaatggtaaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3305060 |
tgttgagaggaagcatcagttccctggaatggtaaa |
3305025 |
T |
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