View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_33 (Length: 257)
Name: NF19922_low_33
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_33 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4129913 - 4129672
Alignment:
| Q |
1 |
tttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129913 |
tttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtga |
4129814 |
T |
|
| Q |
101 |
tagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4129813 |
tagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacattggaatcattgtaaaggattttagctaatgttgt |
4129714 |
T |
|
| Q |
201 |
tttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129713 |
tttccctagccctcccatacctacaatggaaatcactcctat |
4129672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 4092465 - 4092664
Alignment:
| Q |
43 |
ttcaaatcattagtcgtggttttttcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctc |
142 |
Q |
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||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||| ||| ||||| || |||||| |||||||||||||| |||| |
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| T |
4092465 |
ttcaattcattagcggtggttttttctgaagttacagattcaagaagagttttagtgacagtgacaacattaagatctttggagacatgtgcccaccctc |
4092564 |
T |
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| Q |
143 |
tcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
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| T |
4092565 |
ttacctcaaatttctgcttcacatcatggtcattgtaaaggagtttagctagcgttgtttttcctagccctcccatccccacaatggaaatcactcctat |
4092664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 4115236 - 4115408
Alignment:
| Q |
70 |
gaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg |
169 |
Q |
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||||| || |||||||||| ||||||||||| | |||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||||||||| |
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| T |
4115236 |
gaagtgacggattcaagaatggttttagtgacgatgacaacatcaaaatcctttgagatatgtgcccaccctcttacctcaaatttctgcttcacatcat |
4115335 |
T |
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| Q |
170 |
aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
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| T |
4115336 |
ggtcattgtaaaggattttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat |
4115408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 4080366 - 4080538
Alignment:
| Q |
70 |
gaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg |
169 |
Q |
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||||| ||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||| || |
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| T |
4080366 |
gaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacctcaaatttctccttcacttcac |
4080465 |
T |
|
| Q |
170 |
aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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| T |
4080466 |
ggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat |
4080538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 4060758 - 4060930
Alignment:
| Q |
70 |
gaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg |
169 |
Q |
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||||| ||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||| ||||| ||||||||| |||||| || |
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| T |
4060758 |
gaagtgacagattgaagaatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctcttaaatcaaatttctccttcacttcat |
4060857 |
T |
|
| Q |
170 |
aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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||||||||||||| |||||| | ||||||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
4060858 |
ggtcattgtaaaggagtttagcaagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat |
4060930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 3885208 - 3885137
Alignment:
| Q |
171 |
atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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||||||| |||||| |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
3885208 |
atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat |
3885137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 3913778 - 3913850
Alignment:
| Q |
171 |
atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctatg |
243 |
Q |
| |
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|||||||||||| | |||||||| ||||||||| || | |||||||||||| ||||| || |||||||||||| |
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| T |
3913778 |
atcattgtaaagtagtttagctagtgttgtttttccaatccctcccataccaacaatagatatcactcctatg |
3913850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 13933268 - 13933096
Alignment:
| Q |
70 |
gaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg |
169 |
Q |
| |
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||||| ||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||| || |
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| T |
13933268 |
gaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacctcaaatttctccttcacttcac |
13933169 |
T |
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| Q |
170 |
aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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|| ||||| |||| |||||||| ||||||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
13933168 |
ggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat |
13933096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 14005488 - 14005559
Alignment:
| Q |
171 |
atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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||||||| |||||| |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
14005488 |
atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat |
14005559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 18537 - 18366
Alignment:
| Q |
71 |
aagtaacagattcaagaagggttttagtgata-gtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg |
169 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||| ||||||||||||||||| || |||||| ||| || ||||||||| ||| || || | |
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| T |
18537 |
aagtaacagattcaagaagggttttagtgacccggacaat-atcaaaatcttttgagatatatgcccaccctttcaaatcaaatttctcctttacttccg |
18439 |
T |
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| Q |
170 |
aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat |
242 |
Q |
| |
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||| |||||||| | |||||| | |||||||| || | |||||||| || |||||||||||||||||||| |
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| T |
18438 |
gatcgttgtaaagaagtttagcaagagttgttttacccaagcctcccattcccacaatggaaatcactcctat |
18366 |
T |
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