View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_36 (Length: 251)
Name: NF19922_low_36
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 4091424 - 4091516
Alignment:
| Q |
159 |
gcattcatttatatgtaatacaagccatttacaattcaaactaatcttaattaacacataaaatttggtcatgtaaattatatgtttttccta |
251 |
Q |
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| T |
4091424 |
gcatgcattcatatgtaatacaaaccatttacaattcaaactaatcttaattaacacataaaatttggtcatgtaaattatatgtttttccta |
4091516 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 4091336 - 4091391
Alignment:
| Q |
12 |
tatacttatcttgcagtctattttatatggtgtgacaaaaatatattattgaggat |
67 |
Q |
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| T |
4091336 |
tatacttatcttgcagtctattttatatggtgtgacaacaatatattattgaggat |
4091391 |
T |
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