View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_38 (Length: 250)
Name: NF19922_low_38
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26367242 - 26367001
Alignment:
| Q |
1 |
catgaagtccaaaactaaaagatcttcaaattacagtgttagaatataaaaaagaaaattataggggtaaaccagaaacaactaata----ttacatggt |
96 |
Q |
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| T |
26367242 |
catgaagtccaaaactaaaagatcttcaaattatagtgttagaaaataaaaaagaaaattataggggtaaaccagaaacaactaataaatattacatggt |
26367143 |
T |
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| Q |
97 |
aaacatatattaaccctagaaaatactaaagaacattttaagattaatttcttttactagattaaataattacctgaattcctgaagctctatgttgtgc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26367142 |
aaacatatattaaccctagaaaatactaaagaacattttaacattaatttcttttactagattaaataattacctaaattcctgaagctctatgttgtgc |
26367043 |
T |
|
| Q |
197 |
ataactgcaggaactcatatggtctttcttgtcctgaatatt |
238 |
Q |
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| T |
26367042 |
ataactgcaggaactcatatggtctttcttgtcctgaatatt |
26367001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 2611148 - 2611270
Alignment:
| Q |
116 |
aaaatactaaagaacattttaagattaatttcttttactagattaaataattacctgaattcctgaagctctatgttgtgcataactgcaggaactcata |
215 |
Q |
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| T |
2611148 |
aaaatacttaagagcattttaacattaatttattttactagatatattagttacctgaattcctgaacctctatgcggtgcataactgcagggactcata |
2611247 |
T |
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| Q |
216 |
tggtctttcttgtcctgaatatt |
238 |
Q |
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|||| ||| |||||||||||||| |
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| T |
2611248 |
tggtattttttgtcctgaatatt |
2611270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 10350305 - 10350354
Alignment:
| Q |
65 |
gggtaaaccagaaacaactaatattacat--ggtaaacatatattaaccc |
112 |
Q |
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| T |
10350305 |
gggtaaactagaaacagctaatattacatggggtaaacatatattaaccc |
10350354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 42223339 - 42223386
Alignment:
| Q |
65 |
gggtaaaccagaaacaactaatattacatggtaaacatatattaaccct |
113 |
Q |
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| T |
42223339 |
gggtaaaccggaaatcactaatattacatg-taaacatatattaaccct |
42223386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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