View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_4 (Length: 499)
Name: NF19922_low_4
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 49450816 - 49450609
Alignment:
| Q |
17 |
cacagagtcaagagttagttttccaagttcagggataaagacatgtttggatagcaatagaaggttcaaggggtgggactttaagacaggaaccgctcaa |
116 |
Q |
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| T |
49450816 |
cacagagtcaagagttaattttccaagttcagggataaagacaagtttggatagcaatagaaggttcaaggggtgggactttaagacaggaaccgctcaa |
49450717 |
T |
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| Q |
117 |
ttagaaacttctacgatccatcaaactcctttcacggtatgtcaattctaatctaacactatatactctaatgtactgtacatttgtactccaaagtagt |
216 |
Q |
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| T |
49450716 |
ttagaaacttctacgatccatcaaactcctttcacggtatgtcaattctaatctaacactatatactctaatgtactgttcatttgtactccaaagtagt |
49450617 |
T |
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| Q |
217 |
gaaggtac |
224 |
Q |
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|||||||| |
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| T |
49450616 |
gaaggtac |
49450609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 359 - 479
Target Start/End: Complemental strand, 49450328 - 49450208
Alignment:
| Q |
359 |
gtaaatacaacttaaactcgtaggtataatattatcaagagttgcacatgcacattcaatgagataagatacgtgaacatagtttataaatgtgacagtt |
458 |
Q |
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| T |
49450328 |
gtaaatacaacttaaactcgtaagtataatattatcaagagttgtacatgcacattcaatgagataagatacgtgaacatagtttataaatgtgacagtt |
49450229 |
T |
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| Q |
459 |
tctatcttataaattggattt |
479 |
Q |
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| T |
49450228 |
tctatcttataaattggattt |
49450208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 49450442 - 49450391
Alignment:
| Q |
245 |
aagaagctattagtactacttatgtccttaaatattgaattttgtaaataaa |
296 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49450442 |
aagaaactattagtactacttatgtccttaaatattgaattttgtaaataaa |
49450391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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