View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_low_42 (Length: 248)

Name: NF19922_low_42
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_low_42
NF19922_low_42
[»] chr3 (14 HSPs)
chr3 (14-234)||(4130014-4130234)
chr3 (14-234)||(4092102-4092322)
chr3 (10-214)||(11497449-11497653)
chr3 (10-227)||(2919589-2919806)
chr3 (95-216)||(4114861-4114982)
chr3 (11-214)||(5051962-5052165)
chr3 (95-234)||(4079974-4080113)
chr3 (10-212)||(11490984-11491186)
chr3 (36-227)||(5965912-5966103)
chr3 (95-220)||(4060379-4060504)
chr3 (10-234)||(911468-911692)
chr3 (72-226)||(7492141-7492295)
chr3 (12-114)||(3913407-3913509)
chr3 (92-128)||(3885557-3885593)
[»] chr1 (3 HSPs)
chr1 (95-234)||(13933522-13933661)
chr1 (14-224)||(17311816-17312026)
chr1 (92-128)||(14005103-14005139)
[»] scaffold0603 (1 HSPs)
scaffold0603 (47-227)||(4652-4832)
[»] scaffold0267 (1 HSPs)
scaffold0267 (10-234)||(18758-18982)
[»] chr4 (1 HSPs)
chr4 (10-217)||(5988587-5988794)
[»] chr8 (1 HSPs)
chr8 (47-234)||(18388128-18388315)
[»] chr5 (1 HSPs)
chr5 (92-194)||(16446955-16447057)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 4130014 - 4130234
Alignment:
Q  14 atcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130014 atcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttg 4130113  T
Q  114 ccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgc 213  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130114 ccagacatgcatttgtaacaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgc 4130213  T
Q  214 aatagcacttgggggttttct 234  Q
    |||||||||||| ||||||||    
T  4130214 aatagcacttggaggttttct 4130234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 4092322 - 4092102
Alignment:
Q  14 atcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttg 113  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||| | |||||||||||||||  |||||||| |||  | ||||||    
T  4092322 atcacaacacgagatgaaagagttgcactacccatgcaaacctttctttatgttcaccatgtaagatctttggaaactgaagattgctggaatatacttg 4092223  T
Q  114 ccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgc 213  Q
    | || ||||||||||||| ||| ||||||||||||| | |  |||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||    
T  4092222 caagtcatgcatttgtagaaagaaactaccaacaacaacctgatctagaaaaaattggaagagaaattgccaaaaagtgtgatgggatacgattagctgc 4092123  T
Q  214 aatagcacttgggggttttct 234  Q
    |||||||||| ||||| ||||    
T  4092122 aatagcacttaggggtcttct 4092102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 11497653 - 11497449
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    |||||||||||||||||||||||||||| ||  | | |||||||||||| ||| |||||||  ||| | | || ||||||  ||||||||||||||||||    
T  11497653 catcatcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgaaacctctggaaagcgaagattgttggtcttta 11497554  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
     ||||||| |||||||||| |||| ||||  || |||||||||||||||||||| ||||||| || |||||||| ||||||||| | ||  |||||||||    
T  11497553 gttgccaggcatgcatttggagcatgtaatgacaaacaacgatccaatctagaagaaattggcagggaaattgcaaaaaaatgttacggtataccattag 11497454  T
Q  210 ctgca 214  Q
    |||||    
T  11497453 ctgca 11497449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 2919589 - 2919806
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    ||||||||| |||||||||||||||||| || || | |||||||||||| ||| |||||||  | | |||  | ||||||  |||||||| |||||||||    
T  2919589 catcatcactacacgagatgaaagagttccaatatccatgcaaacctttttttatgtccactatatgagacatctggaaacagaagattgctggtcttta 2919688  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
     |||||||||||||||||| ||||    || ||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||| || ||||||||||    
T  2919689 gttgccagacatgcatttggagcattggacaaccaaaaacggtctgatctagaagaaattggtagagaaattgcaaaaaaatgtgacggattaccattag 2919788  T
Q  210 ctgcaatagcacttgggg 227  Q
    |||||||| || ||||||    
T  2919789 ctgcaatatcagttgggg 2919806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 4114982 - 4114861
Alignment:
Q  95 gattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtg 194  Q
    |||||||||||||| ||| ||||| |||||||| || ||||||||||| ||||| ||||||||||| | |||||||| ||||||||||||||||||||||    
T  4114982 gattgttggtctttgctttccagaaatgcatttctatcaagtaactactaacaaagatccaatctaaacaaaattggcagagaaattgccaaaaaatgtg 4114883  T
Q  195 atgggttaccattagctgcaat 216  Q
    |||| |||||||||||||||||    
T  4114882 atggtttaccattagctgcaat 4114861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 5051962 - 5052165
Alignment:
Q  11 atcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttac 110  Q
    ||||||||||||||||||||||||||| ||  | | ||| ||| |||| ||| |||||||  ||| ||| |||||||||  |||||||| |||||| ||     
T  5051962 atcatcacaacacgagatgaaagagttccaaaatccatggaaagctttttttatgtccactatttgagacctttggaaagcgaagattgctggtctatag 5052061  T
Q  111 ttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagc 210  Q
    |||||||||||||||||| | || ||||||||||| ||| ||| ||||| ||| ||||||| ||  |||||||  |||| |||||||| |||||||||||    
T  5052062 ttgccagacatgcatttggaccacgtaactaccaaaaactatcaaatcttgaagaaattggaaggaaaattgcagaaaagtgtgatggattaccattagc 5052161  T
Q  211 tgca 214  Q
    ||||    
T  5052162 tgca 5052165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 4080113 - 4079974
Alignment:
Q  95 gattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtg 194  Q
    ||||| |||||||| ||| ||| | ||||||||  | |||| |||||||||||||||||||||||| ||| |||||| ||||||||| | ||||||||||    
T  4080113 gattgctggtctttgctttccaaatatgcatttccaacaagcaactaccaacaacgatccaatctaaaaacaattggcagagaaatttcaaaaaaatgtg 4080014  T
Q  195 atgggttaccattagctgcaatagcacttgggggttttct 234  Q
    |||| ||||||||||||||||||||| | |||||| ||||    
T  4080013 atggtttaccattagctgcaatagcaatagggggtcttct 4079974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 11491186 - 11490984
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    ||||||||||||||||||||||||| |  ||  | | |||||||| |||  || |||||||  ||| ||| || | ||||  ||||||||||||||||||    
T  11491186 catcatcacaacacgagatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctagaaagcgaagattgttggtcttta 11491087  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
     ||||||||||||||||||  ||| ||||| | ||||||||||||||||||||| || | || |   ||||||| |||||||||||||| ||||||||||    
T  11491086 gttgccagacatgcatttggggcatgtaacgagcaacaacgatccaatctagaagaagtaggcaagaaaattgcaaaaaaatgtgatggattaccattag 11490987  T
Q  210 ctg 212  Q
    |||    
T  11490986 ctg 11490984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 5965912 - 5966103
Alignment:
Q  36 ttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttgccagacatgcatttgtagcaag 135  Q
    ||||| |||| |||| |||||||||||||||||||   || | | |||||||||  |||||||| ||||||||||||||| | |||||||||| || |      
T  5965912 ttgcactacccatgcgaacctttctttctgtccactacttgacacctttggaaagtgaagattgctggtctttacttgccgggcatgcatttggagaaca 5966011  T
Q  136 taactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgcaatagcacttgggg 227  Q
    |||| ||||||  | ||||||||||||| ||||||| |||||| |||| || |||||| |||| | |||||| |||||| ||||||||||||    
T  5966012 taacgaccaacgccaatccaatctagaagaaattggcagagaagttgcaaataaatgttatggatcaccatttgctgcagtagcacttgggg 5966103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 4060504 - 4060379
Alignment:
Q  95 gattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtg 194  Q
    ||||| |||||||  ||| ||| | ||||||||  | |||| |||||||||||||||||||||||| ||| |||||| ||||||||| | ||||||||||    
T  4060504 gattgctggtcttcgctttccaaatatgcatttccaacaagcaactaccaacaacgatccaatctaaaaacaattggcagagaaatttcaaaaaaatgtg 4060405  T
Q  195 atgggttaccattagctgcaatagca 220  Q
    |||| |||||||||||||||||||||    
T  4060404 atggtttaccattagctgcaatagca 4060379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 911692 - 911468
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    |||| |||||||||||||||| ||||||||| || |  |||||||||||||| |  |||||  ||| | | || | | ||  || || ||||||||||||    
T  911692 catcgtcacaacacgagatgagagagttgcactagccgtgcaaacctttcttccaatccactatttgacacctataggaagtgacgagtgttggtcttta 911593  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
    ||||||| ||||||||||| |||| |||| | || |||||| ||||| ||||||   ||||| | ||||||  | |  ||||||||||| ||||||||||    
T  911592 cttgccaaacatgcatttggagcatgtaatttccgacaacggtccaacctagaattgattggcaaagaaatctctacgaaatgtgatggattaccattag 911493  T
Q  210 ctgcaatagcacttgggggttttct 234  Q
    ||||| |||||||||||||| ||||    
T  911492 ctgcagtagcacttgggggtcttct 911468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 7492295 - 7492141
Alignment:
Q  72 gtttaagatctttggaaaaggaagattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattgg 171  Q
    |||| ||| |||||||||  |||||| | ||||||||| || | ||||||||||||| |||| |||||||| ||||||||||  ||| |||| ||| |||    
T  7492295 gtttgagacctttggaaattgaagatggatggtctttagtttctagacatgcatttggagcatgtaactacaaacaacgatcatatcaagaagaaaatgg 7492196  T
Q  172 tagagaaattgccaaaaaatgtgatgggttaccattagctgcaatagcacttggg 226  Q
    ||   ||||||| ||||| |||||||| |||||| | |||||| |||||| ||||    
T  7492195 tatgaaaattgcaaaaaagtgtgatggattaccaatggctgcagtagcacatggg 7492141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 3913509 - 3913407
Alignment:
Q  12 tcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttact 111  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||   |||| ||||||||  ||| |||||| |    |  ||||||||||||||||||||    
T  3913509 tcatcacaacacgggatgaaagtgttgcattagcaatgcaaactcatcttcctgtccactatttgagatctcttcgtagtgaagattgttggtctttact 3913410  T
Q  112 tgc 114  Q
    |||    
T  3913409 tgc 3913407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 3885557 - 3885593
Alignment:
Q  92 gaagattgttggtctttacttgccagacatgcatttg 128  Q
    |||||||| |||||||||||||||| |||||||||||    
T  3885557 gaagattgctggtctttacttgccaaacatgcatttg 3885593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 13933522 - 13933661
Alignment:
Q  95 gattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtg 194  Q
    |||||||||||||| ||||||| | ||||||||  | ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  13933522 gattgttggtctttgcttgccaaatatgcatttccaacaagtaactaccaacaacgatccaatctaaaaaaaattggcagagaaattgccaaaaaatgtg 13933621  T
Q  195 atgggttaccattagctgcaatagcacttgggggttttct 234  Q
    |||| || |||||||||||||||||| | |||||| ||||    
T  13933622 atggcttgccattagctgcaatagcaatagggggtcttct 13933661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 17311816 - 17312026
Alignment:
Q  14 atcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttg 113  Q
    |||||||||||||||||||||||| ||  | | |||||||||||| ||| |||||||  ||| ||| || | ||||  |||||||||||||||||| |||    
T  17311816 atcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgagacctctagaaagcgaagattgttggtctttagttg 17311915  T
Q  114 ccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgc 213  Q
    ||||||||||||||  | || ||||| |||| |||||||||||| ||||| || | |||||  |||| || | ||||||| |||| ||||||||||||||    
T  17311916 ccagacatgcatttagaacatgtaacaaccagcaacgatccaatttagaagaagtaggtaggaaaatggcaataaaatgttatggattaccattagctgc 17312015  T
Q  214 aatagcacttg 224  Q
    | |||||||||    
T  17312016 agtagcacttg 17312026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 14005139 - 14005103
Alignment:
Q  92 gaagattgttggtctttacttgccagacatgcatttg 128  Q
    |||||||| |||||||||||||||| |||||||||||    
T  14005139 gaagattgctggtctttacttgccaaacatgcatttg 14005103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 4832 - 4652
Alignment:
Q  47 atgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaac 146  Q
    ||||||||||||||||||||||||   || | | || ||||||  |||||||| ||||||||||||||  ||| |||||||| |||| ||||| ||||||    
T  4832 atgcaaacctttctttctgtccactacttgacacctctggaaagtgaagattgctggtctttacttgctggacttgcatttggagcatgtaacgaccaac 4733  T
Q  147 aacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgcaatagcacttgggg 227  Q
    | | ||||||||||||| ||||||| | ||||||||| || |||||| |||| | |||||| |||||| ||||||||||||    
T  4732 atcaatccaatctagaagaaattggcaaagaaattgctaataaatgttatggatcaccatttgctgcagtagcacttgggg 4652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 18758 - 18982
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    ||||||||||||||||||||||||||||||| ||   | ||||||||||||| || |||||  |||   | |  || |||  || || ||||||||||||    
T  18758 catcatcacaacacgagatgaaagagttgcactagtcacgcaaacctttcttcctatccactatttggcacccatgcaaagtgatgaatgttggtcttta 18857  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
    ||| | | ||||||||||| |||||||||||||   |  || ||||||||||||  |||||| | |||||||||||||||||||||||| ||||| ||||    
T  18858 ctttcaaaacatgcatttggagcaagtaactacaggctccggtccaatctagaagcaattgggaaagaaattgccaaaaaatgtgatggtttaccgttag 18957  T
Q  210 ctgcaatagcacttgggggttttct 234  Q
    ||||  |||||||||||||| ||||    
T  18958 ctgctgtagcacttgggggtcttct 18982  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 5988587 - 5988794
Alignment:
Q  10 catcatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtcttta 109  Q
    ||||||||||||| | |||||||||||||||  | | ||||||| |||||| |||||||||  ||| ||| || ||||||  ||||||||||||||||||    
T  5988587 catcatcacaacaagggatgaaagagttgcaagatccatgcaaatctttctctctgtccactatttgagacctctggaaagtgaagattgttggtcttta 5988686  T
Q  110 cttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattag 209  Q
     |||| |||||||||||||   || | | | ||  | ||| ||||||||||||| ||||||| ||  ||||||| |||||||||||||| ||||||| ||    
T  5988687 gttgctagacatgcatttggcacatgcagcgacataaaacaatccaatctagaagaaattggcaggaaaattgcaaaaaaatgtgatggattaccatcag 5988786  T
Q  210 ctgcaata 217  Q
    ||||||||    
T  5988787 ctgcaata 5988794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 18388128 - 18388315
Alignment:
Q  47 atgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaac 146  Q
    ||||||||||||| ||| ||||||  ||| ||| || |||| |  |||||||| ||||||||| |||||||||||||||||  |||  | ||| |||| |    
T  18388128 atgcaaacctttcattcggtccactatttgagacctctggagagtgaagattgctggtctttagttgccagacatgcatttagagcttggaacaaccagc 18388227  T
Q  147 aacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgcaatagcacttgggggttttct 234  Q
    |||  ||  |||||||| ||||||||||||||||||| ||||||||| | ||  ||||||||||||||||| ||||||||| ||||||    
T  18388228 aacagtctgatctagaagaaattggtagagaaattgcaaaaaaatgttacggaataccattagctgcaatatcacttggggattttct 18388315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 16446955 - 16447057
Alignment:
Q  92 gaagattgttggtctttacttgccagacatgcatttgtagcaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaat 191  Q
    |||||||| ||||||||| |||||||||||||||||| | || ||||||||||| || || ||||||||||| ||||||| || |||||||| |||||||    
T  16446955 gaagattgctggtctttaattgccagacatgcatttggaccatgtaactaccaagaaagaaccaatctagaagaaattggcagggaaattgcaaaaaaat 16447054  T
Q  192 gtg 194  Q
    |||    
T  16447055 gtg 16447057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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