View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_45 (Length: 240)
Name: NF19922_low_45
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_45 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 437537 - 437759
Alignment:
| Q |
1 |
atgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaactat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
437537 |
atgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattcccttgtccaactat |
437636 |
T |
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| Q |
101 |
atataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437637 |
atataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttg |
437736 |
T |
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| Q |
201 |
ttcatcgctgtcaatctaaatcc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
437737 |
ttcatcgctgtcaatctaaatcc |
437759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28609367 - 28609145
Alignment:
| Q |
1 |
atgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaactat |
100 |
Q |
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|||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||| ||||||||| ||| || ||||||||||| |
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| T |
28609367 |
atgctaaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaactat |
28609268 |
T |
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| Q |
101 |
atataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttg |
200 |
Q |
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| T |
28609267 |
gtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgttg |
28609168 |
T |
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| Q |
201 |
ttcatcgctgtcaatctaaatcc |
223 |
Q |
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| T |
28609167 |
ttcatcgttgtcaatctaaatcc |
28609145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13653238 - 13653018
Alignment:
| Q |
1 |
atgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaactat |
100 |
Q |
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||||||| || ||||| | ||||||||||||||||||||||||||| ||||||||| || ||||| | ||| || ||| || ||||||||||||||| |
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| T |
13653238 |
atgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactat |
13653139 |
T |
|
| Q |
101 |
atataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttg |
200 |
Q |
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||||||| ||| ||| || ||||| |||| ||| |||||||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||| |
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| T |
13653138 |
gtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattgtta |
13653039 |
T |
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| Q |
201 |
ttcatcgctgtcaatctaaat |
221 |
Q |
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|||| ||| ||| ||||||| |
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| T |
13653038 |
ttcactgctttcagtctaaat |
13653018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13660738 - 13660518
Alignment:
| Q |
1 |
atgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaactat |
100 |
Q |
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||||||| || ||||| | ||||||||||||||||||||||||||| ||||||||| || ||||| | ||| || ||| || ||||||||||||||| |
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| T |
13660738 |
atgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaactat |
13660639 |
T |
|
| Q |
101 |
atataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttg |
200 |
Q |
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||||||| || ||| || ||||| ||||||||| |||||||||||||||||| ||||||||||| ||| || ||||| ||||||||||||||||| |
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| T |
13660638 |
gtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattgtta |
13660539 |
T |
|
| Q |
201 |
ttcatcgctgtcaatctaaat |
221 |
Q |
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|||| ||| ||| ||||||| |
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| T |
13660538 |
ttcactgctttcagtctaaat |
13660518 |
T |
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Back To:
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