View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_47 (Length: 239)
Name: NF19922_low_47
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 31837086 - 31837291
Alignment:
| Q |
23 |
tatcacaagaatcagagaaaaattaaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctcctt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837086 |
tatcacaagaatcagagaaaaattaaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctcctt |
31837185 |
T |
|
| Q |
123 |
atgaattacgaaaagctcgtgagagagggagttcatcaaaatcaacacccgattcttgaacctgatatacattgggtgactttaattcgatgataaactt |
222 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31837186 |
atgaattatgaaaagctcgtgagagagggagttcatcaaaatcaacacccgattcttgaacctggtatacattgggtgactttaattcgatgataaactt |
31837285 |
T |
|
| Q |
223 |
tctctg |
228 |
Q |
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|||||| |
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| T |
31837286 |
tctctg |
31837291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 31841126 - 31841324
Alignment:
| Q |
23 |
tatcacaagaatcagagaaaaattaaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctcctt |
122 |
Q |
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|||||||||||||||| | ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841126 |
tatcacaagaatcagaaagcaatcaaggaagagcaatttctgatagagtcttgtgt---caatggaagcacttcacgtcgcagaagacgaagttctcctt |
31841222 |
T |
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| Q |
123 |
atgaattacgaaaagctcgtgagagagggagttcatcaaaatcaacacccgattcttgaacctgatatacattgggtgactttaattcgatgataaactt |
222 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
31841223 |
atgaattatgaaaagctcgtgagagagggagttcatcaaaatcaacacccgattcttgaacctggt----attgggtgactttaattcgatgataaactt |
31841318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 38040744 - 38040897
Alignment:
| Q |
28 |
caagaatcagagaaaaattaaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaa |
127 |
Q |
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||||||||||| |||||||||||||||| ||| ||||||||| |||||| ||| ||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
38040744 |
caagaatcagaaaaaaattaaggaagaggaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaa |
38040843 |
T |
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| Q |
128 |
ttacgaaaagctcgtgagagagggagttcatcaaaatcaacacccgattcttga |
181 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38040844 |
ctacgaggagctcgtgagagagggagttcatcaaaatcaacacccgattcttga |
38040897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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