View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_low_49 (Length: 235)

Name: NF19922_low_49
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_low_49
NF19922_low_49
[»] chr8 (4 HSPs)
chr8 (13-235)||(26367277-26367512)
chr8 (82-215)||(13373200-13373337)
chr8 (79-201)||(11908421-11908548)
chr8 (123-215)||(9235490-9235582)
[»] chr6 (1 HSPs)
chr6 (127-234)||(6759733-6759840)
[»] chr4 (5 HSPs)
chr4 (82-205)||(40920665-40920788)
chr4 (66-200)||(8810096-8810236)
chr4 (66-215)||(13555606-13555762)
chr4 (66-154)||(37589626-37589716)
chr4 (123-201)||(49277732-49277810)
[»] chr2 (4 HSPs)
chr2 (123-200)||(11478057-11478134)
chr2 (66-215)||(42223228-42223380)
chr2 (126-200)||(16590634-16590708)
chr2 (123-200)||(35791182-35791259)
[»] chr1 (7 HSPs)
chr1 (123-200)||(7261505-7261582)
chr1 (66-201)||(33465256-33465397)
chr1 (136-200)||(15654068-15654132)
chr1 (123-206)||(44078710-44078793)
chr1 (82-112)||(7261353-7261383)
chr1 (127-200)||(5883014-5883087)
chr1 (123-200)||(44228461-44228538)
[»] chr7 (5 HSPs)
chr7 (66-215)||(9689229-9689385)
chr7 (123-166)||(15011869-15011912)
chr7 (66-117)||(24951896-24951947)
chr7 (123-200)||(2936192-2936269)
chr7 (82-161)||(10394430-10394510)
[»] scaffold0004 (1 HSPs)
scaffold0004 (123-200)||(82365-82442)
[»] chr3 (3 HSPs)
chr3 (178-235)||(1452080-1452137)
chr3 (66-110)||(25124786-25124830)
chr3 (66-110)||(43426516-43426560)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 26367512 - 26367277
Alignment:
Q  13 atagaatgatatatgaactcttctatgaattcagactaatagaaaatattatcaatatatgt----ttagccatgtaatattagcggtttctggtttacc 108  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||     
T  26367512 atagaatgagatatgaactattctatgaattcagactgatagaaaatattatcaatatatatatatttagccatgtaatattagcggtttctggtttacg 26367413  T
Q  109 cccgtaaaagaaaata---------gatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtactt 199  Q
    || |||||| |||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26367412 cctgtaaaaaaaaaaaaaaaaaaaagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtactt 26367313  T
Q  200 ttaccccttgtgatttaagctagttttgatttaccc 235  Q
    ||| |||||||||||||||| |||||||||||||||    
T  26367312 ttatcccttgtgatttaagcgagttttgatttaccc 26367277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 13373200 - 13373337
Alignment:
Q  82 tgtaatattagcggtttctggtttacccccgtaaaagaaaat----agatttcaaccctgtaattttaaaattctttagttttgaaccttcttgatttta 177  Q
    ||||||||||||| |||| |||||||||| |||||| ||| |    | |||||||| ||||||||| || ||||||| ||||||||||||| ||   | |    
T  13373200 tgtaatattagcgatttccggtttacccctgtaaaaaaaattgtttatatttcaactctgtaatttgaagattctttggttttgaaccttcctggcatca 13373299  T
Q  178 aatttcaaaatttaaggtacttttaccccttgtgattt 215  Q
    |||| |||||||||||||| |||| |||||||| ||||    
T  13373300 aattacaaaatttaaggtatttttgccccttgtaattt 13373337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 11908421 - 11908548
Alignment:
Q  79 ccatgtaatattagcggtttctggtttacccccg-taaaagaaaa----tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgat 173  Q
    |||||||||||||||||||||| | | ||||||  ||||||||||    |||||| ||||| |||||||| || ||||| | |||| | |||||| ||      
T  11908421 ccatgtaatattagcggtttctagctcaccccctataaaagaaaaactttagattccaaccatgtaatttgaagattctatggtttaggaccttcatggc 11908520  T
Q  174 tttaaatttcaaaatttaaggtactttt 201  Q
     | |||||||||||||||||||||||||    
T  11908521 atcaaatttcaaaatttaaggtactttt 11908548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 9235582 - 9235490
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttttaccccttgtgattt 215  Q
    ||||||||||||||||||||| || ||| |||  ||||| |||||| ||   | ||||| ||||||||||||||||||  |||||||| ||||    
T  9235582 tagatttcaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaattt 9235490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 6759733 - 6759840
Alignment:
Q  127 tttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttttaccccttgtgatttaagctagtttt 226  Q
    ||||||| ||||||||| |  |||||||||||||| |  ||| |||  | |||||||||||||||||||||||| ||||| | | |||| ||| ||||||    
T  6759733 tttcaactctgtaatttgatgattctttagttttggattttcatgagatcaaatttcaaaatttaaggtactttcaccccctttaatttgagcgagtttt 6759832  T
Q  227 gatttacc 234  Q
    ||||||||    
T  6759833 gatttacc 6759840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 40920665 - 40920788
Alignment:
Q  82 tgtaatattagcggtttctggtttacccccgtaaaagaaaatagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatt 181  Q
    ||||||||||||||||| | ||||||| | ||| || ||| || ||||||| | | |||||| || |||||||| ||||| || || ||||| | |||||    
T  40920665 tgtaatattagcggtttatagtttacctctgtagaaaaaattaaatttcaatcttttaatttgaatattctttaattttggacttttttgatatcaaatt 40920764  T
Q  182 tcaaaatttaaggtacttttaccc 205  Q
    ||||||||||||||  ||||||||    
T  40920765 tcaaaatttaaggtgattttaccc 40920788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 8810236 - 8810096
Alignment:
Q  66 aatatatgtttagccatgtaatattagcggtttctggtttac-ccccgtaaaagaaaat-----agatttcaaccctgtaattttaaaattctttagttt 159  Q
    |||||||||||| || ||||||||||||| |||| ||||||| ||| |||||| |||||     ||||||||||| |||||||| || ||| |||  |||    
T  8810236 aatatatgtttatccctgtaatattagcgatttccggtttactccctgtaaaaaaaaattgttaagatttcaaccttgtaatttgaagatttttttattt 8810137  T
Q  160 tgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    || |||||| |||  | |||||  |||||||||||||||||    
T  8810136 tggaccttcatgacatcaaattataaaatttaaggtacttt 8810096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 13555606 - 13555762
Alignment:
Q  66 aatatatgtttagcca-tgtaatattagcggtttctggtttacccccgtaaaagaaaat-----agatttcaaccctgtaattttaaaattctttag-tt 158  Q
    |||||||||||| ||  ||||||||||||| |||| |||||||||| |||||| ||| |     |||||||||||||||||||| || ||| ||| | ||    
T  13555606 aatatatgtttaccctctgtaatattagcgatttccggtttacccctgtaaaaaaaatttggttagatttcaaccctgtaatttgaagatttttttgatt 13555705  T
Q  159 ttgaaccttcttgattttaaatttcaaaatttaaggtacttttaccccttgtgattt 215  Q
    ||| |||||| |||  | |||||  ||||||||||||||||||  ||||||| ||||    
T  13555706 ttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaattt 13555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 37589716 - 37589626
Alignment:
Q  66 aatatatgtttagcca-tgtaatattagcggtttctggtttac-ccccgtaaaagaaaatagatttcaaccctgtaattttaaaattcttt 154  Q
    |||||||||||| ||  ||||||||||||||||| |||||||| |||||||  | ||| |||||| ||||| |||||||| || |||||||    
T  37589716 aatatatgtttatcccctgtaatattagcggtttttggtttaccccccgtaggaaaaattagattccaaccatgtaatttgaagattcttt 37589626  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 49277732 - 49277810
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtactttt 201  Q
    |||||| ||||| |||||||| |||||| ||| |||||| |||||| ||   | ||||| |||||||||||||||||||    
T  49277732 tagattccaaccgtgtaatttgaaaattatttggttttggaccttcatggcatcaaattacaaaatttaaggtactttt 49277810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 11478057 - 11478134
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||| |    | ||||| ||||||||||||||||||    
T  11478057 tagatttcaaccctgtaatttgaaaattctttggttttggaccttcatagcatcaaattacaaaatttaaggtacttt 11478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 42223380 - 42223228
Alignment:
Q  66 aatatatgtttagccatgtaatattagcggtttctggtttacccccgtaaaagaaaat-----agatttcaaccctgtaattttaaaattctttagtttt 160  Q
    ||||||||||||  ||||||||||||| | |||| ||||||||| |  |||| |||||     ||||| |||||||||||||| || ||| |||  ||||    
T  42223380 aatatatgttta--catgtaatattagtgatttccggtttacccactgaaaaaaaaattgtttagattccaaccctgtaatttgaagattttttgatttt 42223283  T
Q  161 gaaccttcttgattttaaatttcaaaatttaaggtacttttaccccttgtgattt 215  Q
    |||||||| ||   | ||||| ||||||||||||||||||  |||||||| ||||    
T  42223282 gaaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaattt 42223228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 16590708 - 16590634
Alignment:
Q  126 atttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    ||||||| |||||||||| || ||| ||| |||||| |||||| |||  | ||||| ||||||||||||||||||    
T  16590708 atttcaaacctgtaatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaaggtacttt 16590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 35791259 - 35791182
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    ||||||||||| ||||||||| || |||||||  |||| ||||||| ||   | ||||| ||||||||||||||||||    
T  35791259 tagatttcaactctgtaatttaaagattctttgattttaaaccttcatgccatcaaattacaaaatttaaggtacttt 35791182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 7261582 - 7261505
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||| |||||||||||||| || ||||||| |||||| |||||| |||  | ||||||||||||| ||||||||||    
T  7261582 tagattccaaccctgtaatttgaacattctttggttttggaccttcatgacatcaaatttcaaaattgaaggtacttt 7261505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 33465256 - 33465397
Alignment:
Q  66 aatatatgtttagccat-gtaatattagcggtttctggtttacccccgtaaaag-----aaaatagatttcaaccctgtaattttaaaattctttagttt 159  Q
    |||||||||||| || | |||||||||||||||||| ||||||| |  ||||||     |||||||||| |||||||||||||| || ||||||| ||||    
T  33465256 aatatatgtttaccccttgtaatattagcggtttcttgtttacctcactaaaagaaaaaaaaatagattacaaccctgtaatttaaatattctttggttt 33465355  T
Q  160 tgaaccttcttgattttaaatttcaaaatttaaggtactttt 201  Q
    |  |||||||||   | ||||||| ||| ||||| |||||||    
T  33465356 tagaccttcttggcatcaaatttctaaaattaagatactttt 33465397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 15654068 - 15654132
Alignment:
Q  136 tgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||||| ||||||||||  ||||||||||||| ||  | ||||||||||| ||||||||||||    
T  15654068 tgtaatttgaaaattctttgattttgaaccttctggacatcaaatttcaaaacttaaggtacttt 15654132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 44078793 - 44078710
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttttacccc 206  Q
    |||||| ||||| |||||||| || || |||| |||||| |||||| | |  | ||||||||||||||||||||||||| ||||    
T  44078793 tagattccaaccttgtaatttgaagatccttttgttttggaccttcctaacataaaatttcaaaatttaaggtacttttgcccc 44078710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 7261353 - 7261383
Alignment:
Q  82 tgtaatattagcggtttctggtttacccccg 112  Q
    |||||||||||||||||||||||||||||||    
T  7261353 tgtaatattagcggtttctggtttacccccg 7261383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 5883087 - 5883014
Alignment:
Q  127 tttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||||| ||||||||||| ||| ||| | |||| |||||| |||  | |||||| |||||||||||||||||    
T  5883087 tttcaaccttgtaattttaagattatttggctttgtaccttcatgacatcaaattttaaaatttaaggtacttt 5883014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 44228538 - 44228461
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||| |||||| ||||||| || ||||||| | |||| |||||| ||   | ||||||||||||||||||||||||    
T  44228538 tagattgcaacccagtaatttgaagattctttgggtttggaccttcgtggcatcaaatttcaaaatttaaggtacttt 44228461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 9689229 - 9689385
Alignment:
Q  66 aatatatgtttagcca-tgtaatattagcggtttctggtttacccccgtaaaagaaaat-----agatttcaaccctgtaattttaaaattctttag-tt 158  Q
    |||||||||||| ||  ||||||||||||| |||| |||||||||| |||||| ||| |     |||||||||||||||||||| || ||| ||| | ||    
T  9689229 aatatatgtttaccctctgtaatattagcgatttccggtttacccctgtaaaaaaaatttggttagatttcaaccctgtaatttgaagatttttttgatt 9689328  T
Q  159 ttgaaccttcttgattttaaatttcaaaatttaaggtacttttaccccttgtgattt 215  Q
    ||| |||||| |||  | |||||  ||||||||||||||||||  ||||||| ||||    
T  9689329 ttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaattt 9689385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 15011869 - 15011912
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaacct 166  Q
    ||||||||||||||||||||| || ||||||| |||||||||||    
T  15011869 tagatttcaaccctgtaatttgaagattctttggttttgaacct 15011912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 24951896 - 24951947
Alignment:
Q  66 aatatatgtttagccatgtaatattagcggtttctggtttacccccgtaaaa 117  Q
    |||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||    
T  24951896 aatatacgtttacccatgtaatattagtggtttttggtttacccctgtaaaa 24951947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 2936192 - 2936269
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||| ||||| |||||||| |||||| ||| |||||  |||||| |||  | ||||| ||||||||||||||||||    
T  2936192 tagattccaaccatgtaatttgaaaattatttggttttagaccttcatgacatcaaattacaaaatttaaggtacttt 2936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 10394430 - 10394510
Alignment:
Q  82 tgtaatattagcggtttctggtttaccc-ccgtaaaagaaaatagatttcaaccctgtaattttaaaattctttagttttg 161  Q
    ||||||||||||||||||| ||||||||   ||||||  || |||||||||||  |||||||| || ||||||| ||||||    
T  10394430 tgtaatattagcggtttctcgtttacccgttgtaaaaagaattagatttcaactttgtaatttgaagattctttggttttg 10394510  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 82442 - 82365
Alignment:
Q  123 tagatttcaaccctgtaattttaaaattctttagttttgaaccttcttgattttaaatttcaaaatttaaggtacttt 200  Q
    |||||||||||||| |||||| || ||| |||  ||||| |||||| |||| | ||||| ||||||||||||||||||    
T  82442 tagatttcaaccctttaatttaaagattgtttgattttggaccttcatgatatcaaattacaaaatttaaggtacttt 82365  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 1452080 - 1452137
Alignment:
Q  178 aatttcaaaatttaaggtacttttaccccttgtgatttaagctagttttgatttaccc 235  Q
    ||||||||||||||||||  ||| ||||||||| |||| ||| | |||||||||||||    
T  1452080 aatttcaaaatttaaggtgttttcaccccttgtaatttgagcgaattttgatttaccc 1452137  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25124786 - 25124830
Alignment:
Q  66 aatatatgtttagccatgtaatattagcggtttctggtttacccc 110  Q
    |||||||||||| || ||||||||||||| ||||||||| |||||    
T  25124786 aatatatgtttatccctgtaatattagcgatttctggttaacccc 25124830  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 43426560 - 43426516
Alignment:
Q  66 aatatatgtttagccatgtaatattagcggtttctggtttacccc 110  Q
    |||||||||||| ||  |||||||||||| |||||||||||||||    
T  43426560 aatatatgtttacccccgtaatattagcgatttctggtttacccc 43426516  T

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