View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_50 (Length: 230)
Name: NF19922_low_50
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_50 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28609176 - 28609405
Alignment:
| Q |
1 |
attctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttgg |
100 |
Q |
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| T |
28609176 |
attctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacatagttgg |
28609275 |
T |
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| Q |
101 |
acagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609276 |
acagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaat |
28609375 |
T |
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| Q |
201 |
tttggttcgggctcatcagtgctagttgtg |
230 |
Q |
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| T |
28609376 |
tttggttcgggctcatcagtgctagttgtg |
28609405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 437728 - 437499
Alignment:
| Q |
1 |
attctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttgg |
100 |
Q |
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||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||| ||||||| || |||| ||||||| ||||||| |
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| T |
437728 |
attctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaatttatatatagttgg |
437629 |
T |
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| Q |
101 |
acagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaat |
200 |
Q |
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| T |
437628 |
acaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcagataat |
437529 |
T |
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| Q |
201 |
tttggttcgggctcatcagtgctagttgtg |
230 |
Q |
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| T |
437528 |
tttgtttcgagatcatctgtgctagttgtg |
437499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 13653051 - 13653276
Alignment:
| Q |
5 |
tatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacag |
104 |
Q |
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|||||| |||||||| |||||||||||||| | |||||||||||||||| ||| |||| |||| ||| ||||||| ||||||||| |||||||||| |
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| T |
13653051 |
tatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttagacaaatttggttgtgatttatacatagttggacaa |
13653150 |
T |
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| Q |
105 |
ggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttg |
204 |
Q |
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|| ||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||| |
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| T |
13653151 |
gggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaatttta |
13653250 |
T |
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| Q |
205 |
gttcgggctcatcagtgctagttgtg |
230 |
Q |
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||||||| ||||||||| |||||||| |
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| T |
13653251 |
gttcgggttcatcagtgttagttgtg |
13653276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13660547 - 13660776
Alignment:
| Q |
1 |
attctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttgg |
100 |
Q |
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|||||||||| ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||||| |
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| T |
13660547 |
attctatatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgatttatacatagttgg |
13660646 |
T |
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| Q |
101 |
acagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaat |
200 |
Q |
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||| || ||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || |||||||||||| |
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| T |
13660647 |
acaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaat |
13660746 |
T |
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| Q |
201 |
tttggttcgggctcatcagtgctagttgtg |
230 |
Q |
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||| ||||||| || || ||||| |||||| |
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| T |
13660747 |
tttagttcgggttcgtctgtgctcgttgtg |
13660776 |
T |
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