View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19922_low_52 (Length: 225)

Name: NF19922_low_52
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19922_low_52
NF19922_low_52
[»] chr1 (2 HSPs)
chr1 (19-209)||(2149983-2150173)
chr1 (19-118)||(2162035-2162134)
[»] chr3 (1 HSPs)
chr3 (19-62)||(49771686-49771729)
[»] chr4 (1 HSPs)
chr4 (19-63)||(2885919-2885963)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2149983 - 2150173
Alignment:
Q  19 tccaagaaattcattcacagctatagcattttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatgcacatcctctaatgcaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2149983 tccaagaaattcattcacagctatagcattttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatgcacatcctctaatgcaaaa 2150082  T
Q  119 taacaatgttatcataagaaagattcaatatattatgaaattttgaagttacattaccatttttacctatctagtacacatcctcaaatac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2150083 taacaatgttatcataagaaagattcaatatattatgaaattttgaagttacattaccatttttacctatctagtacacatcctcaaatac 2150173  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 2162035 - 2162134
Alignment:
Q  19 tccaagaaattcattcacagctatagcattttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatgcacatcctctaatgcaaaa 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  2162035 tccaagaaattcattcacagctatagcattctgtccatacatcaatggtgacgaccaataaccccacagaaaccatttgtgcacgtcctctgatgcaaaa 2162134  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 49771729 - 49771686
Alignment:
Q  19 tccaagaaattcattcacagctatagcattttgtccatacatca 62  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  49771729 tccaaggaattcattcacagctatagcattttgtccatacatca 49771686  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 2885963 - 2885919
Alignment:
Q  19 tccaagaaattcattcacagctatagcattttgtccatacatcaa 63  Q
    |||||| |||||||||||   ||||||||||||||||||||||||    
T  2885963 tccaaggaattcattcaccattatagcattttgtccatacatcaa 2885919  T

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