View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_low_8 (Length: 416)
Name: NF19922_low_8
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_low_8 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 42932372 - 42932627
Alignment:
| Q |
23 |
tggaactgtttctgcaaatgtgataatggcacataactcaatgcccaacaagaagagaatgtatgtcttagaaacattggcgaatactagtctggtggac |
122 |
Q |
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| T |
42932372 |
tggaactgtttctgcaaatgtgataatggcacataactcaatgcccaacaagaagagaatgtatgtcttagaaacattgacgaatactagtttggtggat |
42932471 |
T |
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| Q |
123 |
gctctttattccccaatcgatattcgcaacaacctatttagtccaaggtaaaataggaatatcttttacttgatttatatcattgtctacaacaggtttt |
222 |
Q |
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| T |
42932472 |
gctctttattccccaatcgatattcgcaacaacctatttagtccaaggtaaaataggaatatcttttacttgatttatatcattgtctacaacaggtttt |
42932571 |
T |
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| Q |
223 |
aatgtatagcattttagacaaccatgagtttgaagagtgacctggtcttacaatgt |
278 |
Q |
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| T |
42932572 |
aatgtttagcattttagacaaccatgagtttgaagagtgacctggtcttacaatgt |
42932627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 42932693 - 42932757
Alignment:
| Q |
344 |
ctggatggaagttgtactcagtacaatgaaaatcagaaagcatgtgtcacaaattcacctttgtt |
408 |
Q |
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| T |
42932693 |
ctggatggaagttgtactcagtacaatgaaaatcagaaagcatgtgtcacaaattcacctttgtt |
42932757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 59 - 278
Target Start/End: Complemental strand, 14363 - 14144
Alignment:
| Q |
59 |
ctcaatgcccaacaagaagagaatgtatgtcttagaaacattggcgaatactagtctggtggacgctctttattccccaatcgatattcgcaacaaccta |
158 |
Q |
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| T |
14363 |
ctcaatgcctaacaagaagagaatgtatgtcttagaaacattgacgaatactagtttggtggatgctctttattccccaatcgatattcgcaacaaccta |
14264 |
T |
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| Q |
159 |
tttagtccaaggtaaaataggaatatcttttacttgatttatatcattgtctacaacaggttttaatgtatagcattttagacaaccatgagtttgaaga |
258 |
Q |
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| T |
14263 |
tttagtccaaggtaaaataggaatatcttttacttgatttatatcattgtctacaacaggttttaatgtttagcattttagacaaccatgagtttgaaga |
14164 |
T |
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| Q |
259 |
gtgacctggtcttacaatgt |
278 |
Q |
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| T |
14163 |
gtgacctggtcttacaatgt |
14144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 14078 - 14014
Alignment:
| Q |
344 |
ctggatggaagttgtactcagtacaatgaaaatcagaaagcatgtgtcacaaattcacctttgtt |
408 |
Q |
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| T |
14078 |
ctggatggaagttgtactcagtacaatgaaaatcagaaagcatgtgtcacaaattcacctttgtt |
14014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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