View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19923_high_13 (Length: 321)

Name: NF19923_high_13
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19923_high_13
NF19923_high_13
[»] chr7 (1 HSPs)
chr7 (7-307)||(2311221-2311521)
[»] chr4 (10 HSPs)
chr4 (20-144)||(30271223-30271347)
chr4 (20-144)||(30280842-30280966)
chr4 (20-144)||(30304290-30304414)
chr4 (40-147)||(30264349-30264456)
chr4 (40-147)||(30287732-30287839)
chr4 (38-152)||(30032299-30032413)
chr4 (38-144)||(30220274-30220380)
chr4 (38-152)||(30048545-30048659)
chr4 (38-152)||(30062886-30063000)
chr4 (38-152)||(30228684-30228798)
[»] scaffold0024 (2 HSPs)
scaffold0024 (53-143)||(79534-79624)
scaffold0024 (89-143)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 2311521 - 2311221
Alignment:
Q  7 attataaggttctaattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311521 attataaggttctaattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattaga 2311422  T
Q  107 gaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagtttactatgtgaacttcccataatggtttcc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311421 gaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagtttactatgtgaacttcccataatggtttcc 2311322  T
Q  207 cttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttctcatagaattccacnnnnnnnccttttgcaaatattggttttttcac 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||| ||||||||||||||||||    
T  2311321 cttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttgtcatagaattccactttttttccttttgaaaatattggttttttcac 2311222  T
Q  307 a 307  Q
    |    
T  2311221 a 2311221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 30271223 - 30271347
Alignment:
Q  20 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 119  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||||| | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30271223 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30271322  T
Q  120 caagtgcatggtgaagtttgaatat 144  Q
    |||||||||||||||||||||||||    
T  30271323 caagtgcatggtgaagtttgaatat 30271347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 30280966 - 30280842
Alignment:
Q  20 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 119  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||||| | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30280966 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30280867  T
Q  120 caagtgcatggtgaagtttgaatat 144  Q
    |||||||||||||||||||||||||    
T  30280866 caagtgcatggtgaagtttgaatat 30280842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 30304290 - 30304414
Alignment:
Q  20 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 119  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||| | | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30304290 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30304389  T
Q  120 caagtgcatggtgaagtttgaatat 144  Q
    |||||||||||||||||||||||||    
T  30304390 caagtgcatggtgaagtttgaatat 30304414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 30264349 - 30264456
Alignment:
Q  40 aggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttg 139  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||    
T  30264349 aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg 30264448  T
Q  140 aatattat 147  Q
    ||||||||    
T  30264449 aatattat 30264456  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 30287839 - 30287732
Alignment:
Q  40 aggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttg 139  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||    
T  30287839 aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg 30287740  T
Q  140 aatattat 147  Q
    ||||||||    
T  30287739 aatattat 30287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 30032299 - 30032413
Alignment:
Q  38 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 137  Q
    ||||||||||| ||||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| ||||| || ||||||||||| |||||||    
T  30032299 gaaggaaaagataaaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtt 30032398  T
Q  138 tgaatattattgtgc 152  Q
    |||||||||| ||||    
T  30032399 tgaatattatggtgc 30032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 30220380 - 30220274
Alignment:
Q  38 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 137  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  30220380 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtt 30220281  T
Q  138 tgaatat 144  Q
    |||||||    
T  30220280 tgaatat 30220274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 30048545 - 30048659
Alignment:
Q  38 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 137  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||| |||| |||||||    
T  30048545 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtt 30048644  T
Q  138 tgaatattattgtgc 152  Q
    |||||||||| ||||    
T  30048645 tgaatattatggtgc 30048659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 30062886 - 30063000
Alignment:
Q  38 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 137  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||| |||| |||||||    
T  30062886 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtt 30062985  T
Q  138 tgaatattattgtgc 152  Q
    |||||||||| ||||    
T  30062986 tgaatattatggtgc 30063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 30228684 - 30228798
Alignment:
Q  38 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 137  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| | |||||    
T  30228684 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtt 30228783  T
Q  138 tgaatattattgtgc 152  Q
    |||||||||| ||||    
T  30228784 tgaatattatggtgc 30228798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 79534 - 79624
Alignment:
Q  53 ggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 143  Q
    |||||||| || | |||||| | || || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  79534 ggaagagaagggttatcagctctttctaaacatgaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaata 79624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 72506 - 72560
Alignment:
Q  89 agaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 143  Q
    ||||| || ||||||||||| |||||||||||||||||||| |||||||||||||    
T  72506 agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaata 72560  T

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