View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19923_high_3 (Length: 627)
Name: NF19923_high_3
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_high_3 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 3 - 610
Target Start/End: Complemental strand, 25698553 - 25697946
Alignment:
| Q |
3 |
tctacaatcattgatctctgtgttgtagtttgagacaccattgatactatcatagacacccaacttaatgtcacgaacccccgcaagtgcagataacaga |
102 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25698553 |
tctacaatcattgatcactgtgttgtagtttgagacaccattgatactaccatagacacccaacttaaagtcacgaacccccgcaagtgcagataacaga |
25698454 |
T |
|
| Q |
103 |
catagggcctcccctaagtccacatcaaggagaggcgccaaccactctgttttggccagcacaaaacgaccttcatcgtcttgactacatatatcaagat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25698453 |
catagggcctcccctaagtccacatcaaggagaggcgccaaccactctgttttggccagcacaaaacgaccttcatcgtcttgaatacatatatcaagat |
25698354 |
T |
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| Q |
203 |
caactatgttcggagcatgagaaaatgtggcatttaccttacatttgtatcttcaaggacttggtttacgtcattgcatcttaccattagtgtttgattg |
302 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25698353 |
caactttgttcagagcatgagaaaatgtggcatttaccttacacttgtatcttcaaggactcggtttacgtcattgcatcttaccattagtgtttgattg |
25698254 |
T |
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| Q |
303 |
ctttatagtttgactcctcataacttaaacattcaaccaactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgttgatattgctc |
402 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25698253 |
ctttatagtttgactcctcataacttggacattcaaccaactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgttgatattgctc |
25698154 |
T |
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| Q |
403 |
catactttattgttcctatgtttgcaaatgctccagagagtcacaccaaagaatcatttacaacaggtttcgagatatcataacatctaagaatctgatt |
502 |
Q |
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| T |
25698153 |
catactttattgttcctatgtttgcaaatgctctagagagtcacaccaaagaatcatttacaacaggtttcgagatatcataacatctaagaatctgatt |
25698054 |
T |
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| Q |
503 |
ttattctttccatcaagaaccattagcattgctctactctaagaactgaagttgtcacttcattggtgagggaataagagaccaaaattacatcaggatg |
602 |
Q |
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| T |
25698053 |
ttattctttccatcaagaaccattagcattgctctactctaagaactgaagttgtcacttcattggtgagggaataagagaccaaaattacatcaggatg |
25697954 |
T |
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| Q |
603 |
gtccaagg |
610 |
Q |
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| T |
25697953 |
gtcgaagg |
25697946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 136 - 452
Target Start/End: Original strand, 35208031 - 35208350
Alignment:
| Q |
136 |
ggcgccaaccactctgttttggccagcacaaaacgaccttcatcgtcttgactacatatatcaagatcaactatgttcggagcatgagaaaatgtggcat |
235 |
Q |
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||||||||||| ||||||||||| |||||||| ||| ||||| ||| | | |||| ||||||| ||||| ||||| | ||| |||||| | || | |
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| T |
35208031 |
ggcgccaaccatcttgttttggccaacacaaaacaaccgtcatcatctcaaatgcatacatcaagaccaactttgttcataacataagaaaaggaggtag |
35208130 |
T |
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| Q |
236 |
ttaccttacatttgtatcttcaaggacttggtttacgtcattgcatcttaccattagtgtttgattgctttatagtttgactcctcataacttaaacatt |
335 |
Q |
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||| |||||||||||| | |||||| ||||| | |||||||| | ||||||||| || ||||||| |||||||| | | ||||| ||| |||| |
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| T |
35208131 |
ctacattacatttgtatatgtgaggactcagtttatgccattgcatttcaccattagtattcgattgctcagtagtttgattacgcataa-ttaggcatt |
35208229 |
T |
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| Q |
336 |
caaccaactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgtt----gatattgctccatactttattgttcctatgtttgcaaat |
431 |
Q |
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||||| |||| |||| ||| | || || ||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||| | ||||| |
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| T |
35208230 |
caaccgactattaagaagaaagttttcttgttcacaaattgtttaagctgattcgttaatatatattgttccatactttattgctcctatgtgtccaaat |
35208329 |
T |
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| Q |
432 |
gctccagagagtcacaccaaa |
452 |
Q |
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| T |
35208330 |
actctagagagtcgcaccaaa |
35208350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 9271 - 9323
Alignment:
| Q |
139 |
gccaaccactctgttttggccagcacaaaacgaccttcatcgtcttgactaca |
191 |
Q |
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| T |
9271 |
gccaaccactcagttttgaccagcacaaaacgaccttcatcatcttgaataca |
9323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 11453820 - 11453758
Alignment:
| Q |
110 |
cctcccctaagtccacatcaaggagaggcgccaaccactctgttttggccagcacaaaacgac |
172 |
Q |
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| T |
11453820 |
cctcccctaaatccacatcaaggagtggagtcgaccactatgttttggccaacacaaaacgac |
11453758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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