View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19923_high_4 (Length: 624)
Name: NF19923_high_4
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 212 - 607
Target Start/End: Original strand, 40371006 - 40371397
Alignment:
| Q |
212 |
tttacaaaagaatttcttgcatctccataagttatgttttttcacatcaaaagaagaaaaacatgattaaaattctcaagattatttatggtatgatgat |
311 |
Q |
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| T |
40371006 |
tttacaaaataatttcttgcatcttcataagttatgttttttcacatcaaaagaagaaaaacataattaaaattctcaagttaatttatggtatgctcat |
40371105 |
T |
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| Q |
312 |
cattcttatttctctattttttctcgcaagggtcgtaaactccggtatgtcattttcctgatccttttcaaatgttctactctacgttatgaataatttt |
411 |
Q |
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| T |
40371106 |
c---cttatttccctattttttcttgcaagggttgtaaacttcggtatgccattttcctaatccttttcaaatgttctactctaccttatgaataatttt |
40371202 |
T |
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| Q |
412 |
tcgttcatttttaatacatccttacttcttgttatacattacagaatttaattgcattctgtaaaaatgacggtgaatgtttaaatatttttcctctatc |
511 |
Q |
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| T |
40371203 |
tcgttcatttttaatacctccttacttcttgttatacattacagga-ataattgcattttgtaagaatgatgaagaatgtttaatcatttgtcctctatc |
40371301 |
T |
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| Q |
512 |
tctaatagatatttgtagtgataatgaatgcacttgtttgaagcgttccaagttaagttggaaacaagctatattttacttctatgtctacaactt |
607 |
Q |
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| T |
40371302 |
tctaatatacctttgtagtaataatcgatgcacatgtttgaagcgttccaagttaagttggaaataacctatattttacttctatgtctacaactt |
40371397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 40370837 - 40370988
Alignment:
| Q |
66 |
tgttattatgtgcatatcatgaaaggttatacaagaaatgaaagttggatacaaaatatttatgttagatcatttattgagtgacatagaggaacaagca |
165 |
Q |
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| T |
40370837 |
tgttattatgtgcatatcatgaaaggttatacaagaaatgaaagttggatacaaaatatttatgttagatcatttatcgagtgacataaaggaacacgc- |
40370935 |
T |
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| Q |
166 |
caacaacacatgaatgtatgtaaaggactttcaacaatgacactagtttacaaaa |
220 |
Q |
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| T |
40370936 |
--acaacacatgaatgtatgtaaaagactttcaaaaataacactagtttacaaaa |
40370988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 40370679 - 40370713
Alignment:
| Q |
65 |
gtgttattatgtgcatatcatgaaaggttatacaa |
99 |
Q |
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| T |
40370679 |
gtgttattatgtgcatatcaagaaaggttatacaa |
40370713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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