View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19923_high_7 (Length: 427)

Name: NF19923_high_7
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19923_high_7
NF19923_high_7
[»] chr6 (11 HSPs)
chr6 (15-410)||(7564749-7565141)
chr6 (16-385)||(1459540-1459906)
chr6 (16-378)||(1470922-1471281)
chr6 (15-272)||(370783-371040)
chr6 (15-210)||(176198-176387)
chr6 (15-376)||(1442106-1442458)
chr6 (15-111)||(1453838-1453934)
chr6 (15-111)||(1465530-1465626)
chr6 (226-375)||(176000-176146)
chr6 (19-69)||(9819831-9819881)
chr6 (19-68)||(9703888-9703937)
[»] chr4 (2 HSPs)
chr4 (16-378)||(55419475-55419834)
chr4 (15-64)||(22672125-22672174)
[»] chr7 (2 HSPs)
chr7 (15-370)||(3926760-3927112)
chr7 (15-69)||(1078158-1078212)
[»] scaffold0044 (1 HSPs)
scaffold0044 (17-74)||(89137-89194)
[»] chr3 (18 HSPs)
chr3 (15-69)||(2442038-2442092)
chr3 (17-74)||(2456243-2456300)
chr3 (16-64)||(3754604-3754652)
chr3 (19-74)||(9608346-9608401)
chr3 (17-74)||(771499-771556)
chr3 (15-64)||(4142132-4142181)
chr3 (15-64)||(4157942-4157991)
chr3 (17-72)||(2644362-2644417)
chr3 (17-72)||(7324431-7324486)
chr3 (19-70)||(13498222-13498273)
chr3 (15-64)||(803216-803265)
chr3 (15-64)||(1007465-1007514)
chr3 (15-64)||(1022493-1022542)
chr3 (17-74)||(2631351-2631408)
chr3 (15-64)||(2696730-2696779)
chr3 (16-64)||(2459279-2459327)
chr3 (21-69)||(2502147-2502195)
chr3 (17-69)||(2659152-2659204)
[»] chr2 (7 HSPs)
chr2 (15-64)||(7160752-7160801)
chr2 (15-64)||(7168688-7168737)
chr2 (15-58)||(6538844-6538887)
chr2 (6-64)||(7156181-7156239)
chr2 (17-74)||(33026651-33026708)
chr2 (6-58)||(7174362-7174414)
chr2 (16-64)||(36577370-36577418)
[»] chr5 (4 HSPs)
chr5 (16-64)||(11081817-11081865)
chr5 (19-72)||(20292991-20293044)
chr5 (15-64)||(23766860-23766909)
chr5 (15-64)||(23816708-23816757)
[»] chr1 (1 HSPs)
chr1 (15-68)||(51381453-51381506)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 7564749 - 7565141
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7564749 gaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataagcaatccctacaa 7564848  T
Q  115 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 214  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564849 acccctaagctaaagtaacgcagacgttggtgaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 7564948  T
Q  215 atgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564949 atgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaa 7565048  T
Q  315 gtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatattgatagcatgc 410  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7565049 gtctggaatccttctccaaacattg---ctacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatgttgatagcatgc 7565141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 1459540 - 1459906
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 115  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  116 cccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccca 215  Q
    |||| |||||||||| | ||||| |||| || | ||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  1459640 cccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccg 1459739  T
Q  216 tgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaag 315  Q
    |||||||||||| ||| ||||   ||||||||||| ||||| ||||||||||||||| ||   | ||| ||| |||  |||| || ||| ||||||||||    
T  1459740 tgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgatttgagaagggaag 1459839  T
Q  316 tctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaaaatttat 385  Q
    |||| |||  ||||||||| || |    ||||||| |||  |||||||||| ||||||||||| ||||||    
T  1459840 tctggaattgttctccaaaaatcg---ttacctaaggtactaaccttaactagagttttgcaagatttat 1459906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 1470922 - 1471281
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 115  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  116 cccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccca 215  Q
    |||| |||||||||| ||||||| |||| || | | ||||||| ||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||     
T  1471022 cccccaagctaaagttacgcagaggttcatctaaatcataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccg 1471121  T
Q  216 tgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaag 315  Q
    |||||||||||| |||||||||  || |||||||| |||||  |||| |||||||||| | | |   ||||| |||  |||| ||   | ||||||||||    
T  1471122 tgaagagtcattctcttgatctagtacgacccaattaatggtaccacatacaaatttcgccatatacccttcgggttgacccatgagctgagaagggaag 1471221  T
Q  316 tctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaa 378  Q
    |||  |||| ||||||||| ||||    ||||||||||||||||||||||| |||||||||||    
T  1471222 tcttgaatcgttctccaaaaattg---ttacctaaagtatgaaccttaactagagttttgcaa 1471281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 370783 - 371040
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 114  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| ||    
T  370783 gaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctagaa 370882  T
Q  115 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 214  Q
    ||| | |||   || | | ||||| |||| || | ||||||||| |||||| |||||||||||||| |||| ||  |||||||||| |||||||||||||    
T  370883 acctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgaccc 370982  T
Q  215 atgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaattt 272  Q
    |||||  ||  || | || ||||  ||||||||||| |||||  ||||||||||||||    
T  370983 atgaattgttgttctttttatctagtatgacccaattaatggttccacttacaaattt 371040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 176387 - 176198
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 114  Q
    ||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| |||||||||| ||    
T  176387 gaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaa 176288  T
Q  115 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatg 210  Q
    ||||| ||||| |||| | ||||| ||      | ||||||||| |||||  |||||||  |||| ||||| || ||||||| ||| |||||||||    
T  176287 acccccaagctgaagttatgcagaggt------agaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatg 176198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 1442106 - 1442458
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 114  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| ||||||||||||  |  ||    
T  1442106 gaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagcaatcattggaa 1442205  T
Q  115 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 214  Q
    ||||| ||||| |||| |    || |         | ||||||| |||  ||||||||||||||||||||| ||  |||||||||| || ||||| | ||    
T  1442206 acccccaagctcaagttaaatggagg---------agcataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaataatcc 1442296  T
Q  215 atgaagagtcattatcttgatcttt---tatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagg 311  Q
    |||||||||  ||   |||||||     |||| |||||| ||||| |||||||| |||| |||||  ||  |  || | |||| || || ||||||||||    
T  1442297 atgaagagtgttttctttgatctcaccgtatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagg 1442396  T
Q  312 gaagtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgc 376  Q
    ||||||||  |||||| |||||| |||   | ||||||||||||||||| |||||| ||||||||    
T  1442397 gaagtctgggatccttttccaaaaatt---agtacctaaagtatgaaccctaacttcagttttgc 1442458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 111  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 111  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 176146 - 176000
Alignment:
Q  226 ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatcc 325  Q
    |||| ||||||||  ||| ||||||||| |  ||||||||||||||| ||||||   ||||| |||| |||| ||  ||  ||||||||||||| |||||    
T  176146 ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc 176047  T
Q  326 ttctccaaacattgctactacctaaagtatgaaccttaacttgagttttg 375  Q
    ||||||||   |||    | |||||||| |||||||||||||||||||||    
T  176046 ttctccaagagttg---gtgcctaaagtgtgaaccttaacttgagttttg 176000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  19 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 69  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  19 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 68  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 55419834 - 55419475
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 115  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| |||||||||||||||| |  |||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatccttggaaa 55419735  T
Q  116 cccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccca 215  Q
    | |  ||| | |||||   ||   |||| || | |||||| || || |||  |||| ||||||||||||| || |||||||| || ||||||||||||||    
T  55419734 cactcaagttcaagtagaccaacggttcatctagaccatactcgggatgcggaatcacttgataagactcatttcctaaatccagagaaagaatgaccca 55419635  T
Q  216 tgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaag 315  Q
    |  | |||  || |||||||||| |||| |||||| ||||| ||||||||||||||||||   ||   |||| || | |||| || ||||||||||||||    
T  55419634 tagatagtatttctcttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaag 55419535  T
Q  316 tctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaa 378  Q
    ||||  |||||| ||||||  |||    |||||||||||||| || |||||||||||||||||    
T  55419534 tctggtatccttttccaaaagttg---gtacctaaagtatgagccctaacttgagttttgcaa 55419475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 22672125 - 22672174
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672125 gaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 3927112 - 3926760
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 114  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  115 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 214  Q
    ||||||||| | |||  | | |   | || |||| |||| |||| ||| |  ||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  3927012 acccctaaggtgaagatatgaaccggatcatcaagaccaaaatcgggccgtgaaatctcttgataggactcgtttcctaaatcaagagaaagaatgaccc 3926913  T
Q  215 atgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaa 314  Q
    |||||   |  || | ||||| || |||| |||||| ||| | ||||||||||||||||||||||   || |  |||| |||| || | |  ||||||||    
T  3926912 atgaatcatagttcttttgattttctatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaa 3926813  T
Q  315 gtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgag 370  Q
    || || |||||| ||||||| ||||    |||||| |||||||||| |||||||||    
T  3926812 gtttggaatcctcctccaaaaattg---gtacctagagtatgaaccctaacttgag 3926760  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 1078158 - 1078212
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 69  Q
    ||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078158 gaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

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Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 89194 - 89137
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 2442092 - 2442038
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 69  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 9608346 - 9608401
Alignment:
Q  19 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 72  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 7324431 - 7324486
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 72  Q
    |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  19 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 70  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 803216 - 803265
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803216 gaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 1007514 - 1007465
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007514 gaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 1022542 - 1022493
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022542 gaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 2631408 - 2631351
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 2696730 - 2696779
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696730 gaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  21 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 69  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 69  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 6538887 - 6538844
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataa 58  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538887 gaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 7156181 - 7156239
Alignment:
Q  6 aggagcacagaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||| ||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156181 aggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 33026708 - 33026651
Alignment:
Q  17 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 74  Q
    ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 7174362 - 7174414
Alignment:
Q  6 aggagcacagaacaatttagtccaagaatccttatttccataatccttcataa 58  Q
    |||| ||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174362 aggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  16 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  19 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 72  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 23766860 - 23766909
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766860 gaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 23816708 - 23816757
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 64  Q
    |||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816708 gaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 51381453 - 51381506
Alignment:
Q  15 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 68  Q
    |||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381453 gaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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