View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19923_low_1 (Length: 1092)
Name: NF19923_low_1
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_low_1 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 1034; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1034; E-Value: 0
Query Start/End: Original strand, 12 - 1092
Target Start/End: Original strand, 491388 - 492469
Alignment:
| Q |
12 |
agcaaagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491388 |
agcaaagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaac |
491487 |
T |
|
| Q |
112 |
ttattgtaataaggaaatgatatcttaacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaacttgtatctctggcatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491488 |
ttattgtaataaggaaatgatatcttaacaggaaattgttaacttgtgatttttttcatctctaaatctattagttgattcaacttgtatctctggcatt |
491587 |
T |
|
| Q |
211 |
gatagcttcaaagaactgaaactataaaattgttgttttgtccatcggttgggtatgtaaagtttagttgttgacatgtaatttttagatacttctggtc |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491588 |
gatagcttcaaagaactgaaactataagattgttgttttgtccatcggttgggcatgtaaagtttagttgttgacatgtaatttttagatacttctggtc |
491687 |
T |
|
| Q |
311 |
tacctcttctatgtccaaatggatatttttatctataaaacacttaagtctaatctaattttgattcacaatgcaagtaggtacagtattattgatgctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491688 |
tacctcttctatgtccaaatggatatttttatctataaaacactcaagtctaatctaattttgattcacaatgcaagtaggtacagtattattgatgctc |
491787 |
T |
|
| Q |
411 |
aaaaagggcatcaagaatcatgagataagcttgcatctgaaattatcatgtataactaaggataaagtgtactgaatcatcagtagttgtgccaataaaa |
510 |
Q |
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| T |
491788 |
aaaaagggcatcaagaatcatgagataagcttgcatctgaaattatcatgtataactaaggataaagtgtactgaatcatcagtagttgtgccaataaaa |
491887 |
T |
|
| Q |
511 |
actacgaagataaaagttagtcaaatcataggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactct |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491888 |
actacgaagataaaagttagtcaaatcataggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactct |
491987 |
T |
|
| Q |
611 |
gctgaaccaagtgcttcacaaaatatgacttgttgtatctagagttgaagttgctccaatgcaatgtgtgattgcgtccatatcttgttctagggtggtg |
710 |
Q |
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| T |
491988 |
gctgaaccaagtgcttcacaaaatatgacttgttgtatctagagttgaagttgctccaatgcaatgtgtgattgcgtccatatcttgttctagggtggtg |
492087 |
T |
|
| Q |
711 |
gttcaaccgccttctcagtgttagacactgccctggctgatgttcctccatgtccacggtaatgtttgtttgatagataagtaagcaagtgtttggttga |
810 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
492088 |
gttcaaccaccttctcggtgttagacactgccctggctgatgttcctccatgtccatggtaatgtttgtttgatagataagtaagcaagtgtttggttga |
492187 |
T |
|
| Q |
811 |
gtggtagacagctgtagaagttttaatctgtagtttctgatttgttgtgattttttatcacaattttagcgatttccgaagtattttatctgcatgttta |
910 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
492188 |
gtggtagacaactgtagaagttttaatctgtagtttctgatttgttgtgattttttatcacaattttagcgttttccgaagtattttatctgcatgtcta |
492287 |
T |
|
| Q |
911 |
taatatggttcagggttatatatgtctatggtccacggtaatacttaggacttgtggtttttatttagtactaaacagctggattgtctctcttaatggc |
1010 |
Q |
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| T |
492288 |
taatatggttcagggttatatatgtctatggtccacggtaatacttaggacttgtggtttttatttagtactaaacagctggattgtctctcttaatggc |
492387 |
T |
|
| Q |
1011 |
taattactttataaatgtgaaatgggtatttttaaatatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
1092 |
Q |
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| T |
492388 |
taattactttataaatgtgaaatgggtatttttaaagatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
492469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 495061 - 495255
Alignment:
| Q |
19 |
ggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaacttattgt |
118 |
Q |
| |
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|||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||| | |||||| ||| ||| |
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| T |
495061 |
ggggaaagattgtactatgactacaatggatacgaacatgaatatccatctgaacattttgtctaattatgtagactgtcagtgctctacagcttgttgc |
495160 |
T |
|
| Q |
119 |
aataaggaaatgatatc-ttaacaggaaattgttaacttgtgattttttcatctctaaatctattagttgattcaacttgtatctctggcattga |
212 |
Q |
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|||||| |||| ||| | |||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
495161 |
aataagaaaataataactttaacagggaattgttaacttgtattttattcttctctaaatctattagttgattcaacatgtacctttggcattga |
495255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 630 - 811
Target Start/End: Original strand, 495449 - 495622
Alignment:
| Q |
630 |
aaaatatgacttgttgtatctagagttg-aagttgctccaatgcaatgtgtgattgcgtccatatcttgttcta----gggtggtggttcaaccgccttc |
724 |
Q |
| |
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|||||| ||||||||||||||||||||| || ||||||||| ||||||| || ||||||||||||||| || |||||||||||||||||||||| |
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| T |
495449 |
aaaataggacttgttgtatctagagttggaaattgctccaaagcaatgt---atcgcgtccatatcttgtactgacgggggtggtggttcaaccgccttc |
495545 |
T |
|
| Q |
725 |
tcagtgttagacactgccctggctgatgttcctccatgtccacggtaatgtttgtttgatagataagtaagcaagtgtttggttgag |
811 |
Q |
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| T |
495546 |
tcagtgttggactctgccctggctgatgtt----------caccataaggtttgtttgatagatatgtaagcaagtgtctggttgag |
495622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 503311 - 503417
Alignment:
| Q |
16 |
aagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcc--tgtcaataatctacaactt |
113 |
Q |
| |
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||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||| |||||||| ||||||| ||||| ||||| |
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| T |
503311 |
aagggagaaagattgtattatgactacaatggatccgaaaatgcatatccaactaaacattttgtttaaccgtgtagcctttgtcaatgatctagaactt |
503410 |
T |
|
| Q |
114 |
attgtaa |
120 |
Q |
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| T |
503411 |
attgtaa |
503417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 503834 - 503895
Alignment:
| Q |
622 |
tgcttcacaaaatatgact--tgttgtatctagagttgaagttgctccaatgcaatgtgtgat |
682 |
Q |
| |
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| T |
503834 |
tgcttaacaaaatatgactgatgttgtatctagagttgaagttgctccta-gcaatgtgtgat |
503895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 500054 - 500095
Alignment:
| Q |
52 |
gaacatgaatatccaactgaacattttgtctaattgtgtagc |
93 |
Q |
| |
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| T |
500054 |
gaacatgaatatccagctgaatattttgtctaattgtgtagc |
500095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1003 - 1092
Target Start/End: Original strand, 495759 - 495848
Alignment:
| Q |
1003 |
ttaatggctaattactttataaatgtgaaatgggtatttttaaatatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
1092 |
Q |
| |
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|||| ||| ||| |||||||||||| ||||| |||||| || ||||||||||| | ||||||| ||||||||| |||||||||||| |
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| T |
495759 |
ttaagggcaaataactttataaatgcaaaatgattattttaaacaatttgtgatcacttaaagaattcaaggatttaaatgattgattat |
495848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 8762631 - 8762450
Alignment:
| Q |
15 |
aaagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaactta |
114 |
Q |
| |
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||||||| |||||||||| ||||| | |||||||| |||||||||| || ||| | |||||||||| |||||||||||| | | ||| |||| | |||| |
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| T |
8762631 |
aaaggggaaaaggttgtactatgattgcaatggataagaacatgaaaattcaaataaacattttgtataattgtgtagcatttgaatgctctagagctta |
8762532 |
T |
|
| Q |
115 |
ttgtaataaggaaatgatatctt-aacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaac |
194 |
Q |
| |
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||| | ||| |||| || ||| |||||| ||| ||| |||||||||||| ||||||| ||| ||||||| |||||||||| |
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| T |
8762531 |
gtgtgacaagaaaatagtaacttcaacagggaatagttgacttgtgattttattcatctttaattctattatttgattcaac |
8762450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 8767712 - 8767531
Alignment:
| Q |
15 |
aaagggggaaaggttgtattatgactacaatggattagaacatgaatatccaactgaacattttgtctaattgtgtagcctgtcaataatctacaactta |
114 |
Q |
| |
|
||||||| ||| |||||| ||||| | |||||||| |||| |||| || ||||| |||||||||| |||||||||||| ||| ||| |||| | |||| |
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| T |
8767712 |
aaaggggaaaaagttgtactatgattgcaatggataggaacttgaaaattcaactaaacattttgtataattgtgtagcatgtgaatgctctagagctta |
8767613 |
T |
|
| Q |
115 |
ttgtaataaggaaatgatatctt-aacaggaaattgttaacttgtgatttt-ttcatctctaaatctattagttgattcaac |
194 |
Q |
| |
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||| ||||| |||| || ||| |||||| ||| ||| |||||| ||||| ||||||| ||| ||||||| |||||||||| |
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| T |
8767612 |
gtgtgataagaaaatagtaacttcaacagggaatagttgacttgtaattttattcatctttaattctattatttgattcaac |
8767531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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