View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19923_low_10 (Length: 341)
Name: NF19923_low_10
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 492759 - 492441
Alignment:
| Q |
18 |
cagaaccacattgacaggtagttgacagtgcaccaacaaaaagttaaataactacccaaattaacaaacccaaatagttaaatatttacttgtattcctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
492759 |
cagaaccacattgacaggtagttgacagtgcaccaacaaaaagttaaataactacccaaattaacaaacccaaatagttaaataattacttgtattcctc |
492660 |
T |
|
| Q |
118 |
catgttcaagagcaggagaattagcttcccttggtgccatttcaggtatataagttcattactgaactcagttttagttgcaatcaacgctcttgccaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
492659 |
catgttcaagagcaggagaattagcttcccttggtgccatttcaggtatataagttcattactgaactcagttttagttgcagtcaacgctcttgccaat |
492560 |
T |
|
| Q |
218 |
gaagccatctactctaatctcctcttagaatcatcactcagaacaaacggcagcagcttcttatggaaggaaagagatatgtcgagcaacataatcaatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
492559 |
gaagccatctactctaatctcctcttagaatcatcactcagaacaaacggcagcagcttcttatggaaggaaagagatatgtcgagcaacataatcaatc |
492460 |
T |
|
| Q |
318 |
atctaaatcctttgcttct |
336 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
492459 |
atctaaatcctttgattct |
492441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 493515 - 493368
Alignment:
| Q |
111 |
attcctccatgttcaagagcaggagaattagcttcccttggtgccatttcaggtatataagt----tcattactgaactcagttttagttgcaatcaacg |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| | ||||||| ||| | ||||||| || ||||||||||| |||||||||||| |||||| |
|
|
| T |
493515 |
attcctccacgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgcagtcaacg |
493416 |
T |
|
| Q |
207 |
ctcttgccaatgaagccatctactctaatctcctcttagaatcatcac |
254 |
Q |
| |
|
|| ||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
493415 |
ctgttgccaacgaagccatctgttctaatctcctctttgaatcatcac |
493368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 489632 - 489472
Alignment:
| Q |
97 |
aaatatttacttgtattcctccatgttcaagagcaggagaattagcttcccttggtgccatttcaggtata----taagttcattactgaactcagtttt |
192 |
Q |
| |
|
||||| |||| || ||||| ||| |||||||| ||||||||||||| |||||||| |||||| |||| ||| |||| |||||||||||||| ||||| |
|
|
| T |
489632 |
aaatagttacctgcattcccccacgttcaagaacaggagaattagcatcccttggcgccattccaggcatatacgtaagctcattactgaactctgtttt |
489533 |
T |
|
| Q |
193 |
agttgcaatcaacgctcttgccaatgaagccatctactctaatctcctcttagaatcatca |
253 |
Q |
| |
|
||| || ||||||| | ||||| || ||||||| |||||||||||||| |||||||| |
|
|
| T |
489532 |
agtagctgtcaacgcggtcgccaacgacgccatctgttctaatctcctcttcaaatcatca |
489472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 501100 - 500944
Alignment:
| Q |
117 |
ccatgttcaagagcaggagaattagcttcccttggtgccatttcaggtatata----agttcattactgaactcagttttagttgcaatcaacgctcttg |
212 |
Q |
| |
|
|||| ||||||||||| |||||| || | ||||||||||||| |||| ||||| ||| | ||||||||||| | ||| |||||| |||||| | |
|
|
| T |
501100 |
ccatcttcaagagcagtagaatttgcattccttggtgccattccaggcatatatgtaagtgcgttactgaactccgctttggttgcagccaacgcattca |
501001 |
T |
|
| Q |
213 |
ccaatgaagccatctactctaatctcctcttagaatcatcactcagaacaaacggca |
269 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||||| ||||| | ||||| |||| |
|
|
| T |
501000 |
ccaacgaagccatctgttctaatctcctcatagaatcagcactcggcacaaatggca |
500944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 495864 - 495827
Alignment:
| Q |
292 |
agatatgtcgagcaacataatcaatcatctaaatcctt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
495864 |
agatatgtcgagcaacataatcaatcatttaaatcctt |
495827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 504127 - 504078
Alignment:
| Q |
281 |
tggaaggaaagagatatgtcgagcaacataatcaatcatctaaatccttt |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
504127 |
tggaaggaaagagatacatcgagcaacataatcagttatttaaatccttt |
504078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 8763269 - 8763121
Alignment:
| Q |
121 |
gttcaagagcaggagaattagcttcccttggtgccatttcaggtata----taagttcattactgaactcagttttagttgcaatcaacgctcttgccaa |
216 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| ||||| ||| ||| ||| |||| || ||||||||||| | ||| |||||| |||||||| ||||||| |
|
|
| T |
8763269 |
gttcaatagcaggataattagcatccctcggtgctattccagacatagacgtaagctcgttactgaactccgctttggttgcagtcaacgctgttgccaa |
8763170 |
T |
|
| Q |
217 |
tgaagccatctactctaatctcctcttagaatcatcactcagaacaaac |
265 |
Q |
| |
|
|| ||||||| || ||||||||||| |||||| |||| | |||||| |
|
|
| T |
8763169 |
cgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaac |
8763121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 8768428 - 8768280
Alignment:
| Q |
121 |
gttcaagagcaggagaattagcttcccttggtgccatttcaggtata----taagttcattactgaactcagttttagttgcaatcaacgctcttgccaa |
216 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| ||||| ||| ||| ||| |||| || ||||||||||| | ||| |||||| |||||||| ||||||| |
|
|
| T |
8768428 |
gttcaatagcaggataattagcatccctcggtgctattccagacatagacgtaagctcgttactgaactccgctttggttgcagtcaacgctgttgccaa |
8768329 |
T |
|
| Q |
217 |
tgaagccatctactctaatctcctcttagaatcatcactcagaacaaac |
265 |
Q |
| |
|
|| ||||||| || ||||||||||| |||||| |||| | |||||| |
|
|
| T |
8768328 |
cgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaac |
8768280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University