View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19923_low_15 (Length: 276)

Name: NF19923_low_15
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19923_low_15
NF19923_low_15
[»] chr2 (3 HSPs)
chr2 (89-196)||(5441994-5442103)
chr2 (205-249)||(5442094-5442138)
chr2 (10-68)||(5441943-5441996)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 5441994 - 5442103
Alignment:
Q  89 gtaaaatactcaagcagccgtgcggcgttggttatcatat--ttattacgaaataatattagtcattaaattgcacaagatatgnnnnnnnattagaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  5441994 gtaaaatactcaagcagccgtgcggcgttggttatcatatatttattacgaaataatattagtcattaaattgcacaagatatgtttttttattagaaat 5442093  T
Q  187 ttcacaatat 196  Q
    ||||||||||    
T  5442094 ttcacaatat 5442103  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 5442094 - 5442138
Alignment:
Q  205 ttcacaatatatgctgattcacatctgctctcacgaaaacatgta 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5442094 ttcacaatatatgctgattcacatctgctctcacgaaaacatgta 5442138  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 5441943 - 5441996
Alignment:
Q  10 ataattctgcttctgcagcaatccaggtcttttactttagacactaataaatgtgtgta 68  Q
    ||||||||||||||||||||     |||||||||||||||| |||||||||||||||||    
T  5441943 ataattctgcttctgcagca-----ggtcttttactttagagactaataaatgtgtgta 5441996  T

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