View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19923_low_2 (Length: 797)

Name: NF19923_low_2
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19923_low_2
NF19923_low_2
[»] chr1 (9 HSPs)
chr1 (266-781)||(251865-252392)
chr1 (488-751)||(246230-246494)
chr1 (153-256)||(252630-252733)
chr1 (49-124)||(252727-252802)
chr1 (512-640)||(8814799-8814925)
chr1 (511-625)||(231049-231162)
chr1 (250-414)||(234405-234572)
chr1 (325-382)||(246068-246125)
chr1 (711-781)||(234781-234861)
[»] chr3 (4 HSPs)
chr3 (528-639)||(9495529-9495641)
chr3 (504-640)||(9339995-9340123)
chr3 (528-577)||(9627188-9627237)
chr3 (528-574)||(9335204-9335250)
[»] chr6 (1 HSPs)
chr6 (711-754)||(213554-213597)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 266 - 781
Target Start/End: Complemental strand, 252392 - 251865
Alignment:
Q  266 gagtttgaataatcaa----ctagaaattataactcttcaatatatcaaacatgaaatcaactagaaaatcacctaataaggagatggcttttactccat 361  Q
    ||||||||||||||||    |||||||||||||||||||||||| |||||||| |||||||||| | |||       |||||||||||||||||||||||    
T  252392 gagtttgaataatcaatcatctagaaattataactcttcaatatttcaaacatcaaatcaacta-ataat-------taaggagatggcttttactccat 252301  T
Q  362 atccattgatcaagtcacacaaatttatgtcgtttcatagaatattaaaacttgtaactgataaattgagtttaaacttagcaggaccataataatgcag 461  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  252300 atccattgatcaagtcacacaaatttatgtcatttcatagaatattaaaacttgtaactgataaattgagtttaaacttagcaggaccataataatgcag 252201  T
Q  462 gcggtcaataacaa---------------ctttcttcaataag------agttgaagaaactgtaagaatgcttatccggcaacccaaaattccacctca 540  Q
    ||||||||||||||               |||||||| |||||      ||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  252200 gcggtcaataacaaaataatagaacacaactttcttcgataagcgagcgagttgaagaaactgttagaacgcttatccggcaacccaaaattccacctca 252101  T
Q  541 ttttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaaaaggaacaacaaaagaagataatcaaacc 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  252100 ttttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatagtctgcaaaaggaacaacaaaagaagataatcaaacc 252001  T
Q  641 tcattggtaaatctggtttcgaaaattcataatgataacttgccatggaatggtgatgtcttgcatatattcaaatagatccagatttcagtaaaagcta 740  Q
    |||||| |||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  252000 tcattgttaaatctggttttgaaaattcataatgataacttgcc-----atggtgatgtcttgcatatattcaaatagatccagatttcagtaaaagcta 251906  T
Q  741 attgcatatgaaaattaaatgaagagctagtgaaaaattag 781  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  251905 attgcatatgaaaattaaatgaagagctagtgaaaaattag 251865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 488 - 751
Target Start/End: Original strand, 246230 - 246494
Alignment:
Q  488 agagttgaagaaactgtaagaatgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtt 587  Q
    |||||| |||||||||| ||||||  ||||||||||||| || ||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  246230 agagttaaagaaactgttagaatgtgtatccggcaaccccaa-ttccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtt 246328  T
Q  588 tctttcaaagcatatattctgcaaaaggaacaacaaaagaagataatcaaac-------ctcattggtaaatctggtttcgaaaattcataatgataact 680  Q
      || ||||||||||| || ||||||||||||||||||||||||||||||||       | ||| | ||||||| |||| |||||| |||||||||||||    
T  246329 cattgcaaagcatatagtccgcaaaaggaacaacaaaagaagataatcaaacccatcaacacatggttaaatctagtttagaaaatccataatgataact 246428  T
Q  681 tgccatggaatggtgatgtcttgcatatattcaaatagatccagatttcagtaaaagctaattgcatatga 751  Q
    ||||     |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  246429 tgcc-----atggtgatgtctttaatatattcaaatagatccagatttcaataaaagctaattgcatatga 246494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 252733 - 252630
Alignment:
Q  153 taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacatatcaaatatttgaaccctataatgtagcaaacttgcataatacaaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |    
T  252733 taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacagatcaaatatttgacccctataatgtagcaaacttgcataatacaga 252634  T
Q  253 tcaa 256  Q
    ||||    
T  252633 tcaa 252630  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 252802 - 252727
Alignment:
Q  49 gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  252802 gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta 252727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 512 - 640
Target Start/End: Complemental strand, 8814925 - 8814799
Alignment:
Q  512 cttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaa 611  Q
    ||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| | | | |||| |  |||||||||||  ||||||    
T  8814925 cttatccagcaacccaa--ttccatctcattttccagcatcttttcatatgaatatgtaattaggacttaagagtttgtcacaaagcatatagcctgcaa 8814828  T
Q  612 aaggaacaacaaaagaagataatcaaacc 640  Q
     |||||||| |||||||| ||| ||||||    
T  8814827 gaggaacaataaaagaagctaaacaaacc 8814799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 511 - 625
Target Start/End: Original strand, 231049 - 231162
Alignment:
Q  511 gcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgca 610  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |    || |||| |||||| ||||||    
T  231049 gcttatccggcaaaccaaa-ttccacctcgttttccagcatcttttcatatgaatgtgtaattaggatttaggagaccgttgcaaaacatatagtctgca 231147  T
Q  611 aaaggaacaacaaaa 625  Q
    |||||||||| ||||    
T  231148 aaaggaacaataaaa 231162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 414
Target Start/End: Original strand, 234405 - 234572
Alignment:
Q  250 aaatcaagtaaataatgagtttgaataatcaac--tagaaattataactcttcaatatatcaaacatgaa----atcaactagaaaatcacctaataagg 343  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||| |||||| |    | |||| || |||||||  |||||||    
T  234405 aaatcaag-aaataatgagtttgaataatcaactatagaaattataactcgtcaatatatcgaacatgtacggtaccaac-aggaaatcactgaataagg 234502  T
Q  344 agatggcttttactccatatccattgatcaagtcacacaaatttatgtcgtttcatagaatattaaaactt 414  Q
    |||| || |||| || ||||||||||| ||| |||||||  |||| ||  ||| |||||||||||||||||    
T  234503 agatagc-tttagtctatatccattgagcaaatcacacagttttaagttatttgatagaatattaaaactt 234572  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 246068 - 246125
Alignment:
Q  325 agaaaatcacctaataaggagatggcttttactccatatccattgatcaagtcacaca 382  Q
    ||||||||||  ||||||||||||||||||| ||||||||||| || |||||||||||    
T  246068 agaaaatcactgaataaggagatggcttttaatccatatccatcgagcaagtcacaca 246125  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 711 - 781
Target Start/End: Original strand, 234781 - 234861
Alignment:
Q  711 tcaaatagatccagatttcagtaaaagcta---attgcatatgaaaa-------ttaaatgaagagctagtgaaaaattag 781  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||       ||||||||||| |||||||||||||||    
T  234781 tcaaatagatccagatttcagtaaaagctaattattgcatatgaaaaaagaaatttaaatgaagaactagtgaaaaattag 234861  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 528 - 639
Target Start/End: Complemental strand, 9495641 - 9495529
Alignment:
Q  528 aaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaaaaggaac-aacaaaag 626  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||| | || | ||| |||| ||   || |||||| |||||||||||||| || |||||    
T  9495641 aaattccacctcattttgcagcatctcttcatatgaacatgtaatcacgaattaggagtttgttggtaaacatatagtctgcaaaaggaacaaataaaag 9495542  T
Q  627 aagataatcaaac 639  Q
    ||||||| |||||    
T  9495541 aagataaacaaac 9495529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 640
Target Start/End: Original strand, 9339995 - 9340123
Alignment:
Q  504 taagaatgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatata 603  Q
    |||||| |||||||| |||| ||||| | | |||||||||||||||||||||| ||||||||||| ||||||||       |||| ||   || ||||||    
T  9339995 taagaacgcttatccagcaatccaaa-tgcaacctcattttccagcatcttttgatatgaatatgcaattagga-------gtttgttggtaaacatata 9340086  T
Q  604 ttctgcaaaaggaacaacaaaagaagataatcaaacc 640  Q
     |||||||||| |||||  ||||||||||||||||||    
T  9340087 gtctgcaaaagtaacaatgaaagaagataatcaaacc 9340123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 577
Target Start/End: Complemental strand, 9627237 - 9627188
Alignment:
Q  528 aaattccacctcattttccagcatcttttcatatgaatatgtaattagga 577  Q
    ||||||||| |||||||| ||||| |||||||| ||||||||||||||||    
T  9627237 aaattccacttcattttctagcatattttcatacgaatatgtaattagga 9627188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 574
Target Start/End: Original strand, 9335204 - 9335250
Alignment:
Q  528 aaattccacctcattttccagcatcttttcatatgaatatgtaatta 574  Q
    |||||| ||| | ||||||||||||||||||| ||||||||||||||    
T  9335204 aaattcaaccactttttccagcatcttttcatctgaatatgtaatta 9335250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 711 - 754
Target Start/End: Complemental strand, 213597 - 213554
Alignment:
Q  711 tcaaatagatccagatttcagtaaaagctaattgcatatgaaaa 754  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  213597 tcaaatagatccagatttcagtaaaagctagttgcatatgaaaa 213554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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