View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19923_low_5 (Length: 567)
Name: NF19923_low_5
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_low_5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 15 - 567
Target Start/End: Original strand, 491917 - 492469
Alignment:
| Q |
15 |
aggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactctgctgaaccaagtgcttcacaaaatatgac |
114 |
Q |
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| T |
491917 |
aggaaatcaaatacagcacaaaaaggaaaaacattactgtcactactgcatgctcacaatatcttgactctgctgaaccaagtgcttcacaaaatatgac |
492016 |
T |
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| Q |
115 |
ttgttgtatctagagttgaagttgctccaatgcaatgtgtgattgcgtccatatcttgttctagggtggtggttcaaccgccttctcagtgttagacact |
214 |
Q |
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| T |
492017 |
ttgttgtatctagagttgaagttgctccaatgcaatgtgtgattgcgtccatatcttgttctagggtggtggttcaaccaccttctcggtgttagacact |
492116 |
T |
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| Q |
215 |
gccctggctgatgttcctccatgtccacggtaatgtttgtttgatagataagtaagcaagtgtttggttgagtggtagacagctgtagaagttttaatct |
314 |
Q |
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| T |
492117 |
gccctggctgatgttcctccatgtccatggtaatgtttgtttgatagataagtaagcaagtgtttggttgagtggtagacaactgtagaagttttaatct |
492216 |
T |
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| Q |
315 |
gtagtttctgatttgttgtgattttttatcacaattttagcgatttccgaagtattttatctgcatgtttataatatggttcagggttatatatgtctat |
414 |
Q |
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| T |
492217 |
gtagtttctgatttgttgtgattttttatcacaattttagcgttttccgaagtattttatctgcatgtctataatatggttcagggttatatatgtctat |
492316 |
T |
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| Q |
415 |
ggtccacggtaatacttaggacttgtggtttttatttagtactaaacagctggattgtctctcttaatggctaattactttataaatgtgaaatgggtat |
514 |
Q |
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| T |
492317 |
ggtccacggtaatacttaggacttgtggtttttatttagtactaaacagctggattgtctctcttaatggctaattactttataaatgtgaaatgggtat |
492416 |
T |
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| Q |
515 |
ttttaaatatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
567 |
Q |
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| T |
492417 |
ttttaaagatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
492469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 105 - 286
Target Start/End: Original strand, 495449 - 495622
Alignment:
| Q |
105 |
aaaatatgacttgttgtatctagagttg-aagttgctccaatgcaatgtgtgattgcgtccatatcttgttcta----gggtggtggttcaaccgccttc |
199 |
Q |
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| T |
495449 |
aaaataggacttgttgtatctagagttggaaattgctccaaagcaatgt---atcgcgtccatatcttgtactgacgggggtggtggttcaaccgccttc |
495545 |
T |
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| Q |
200 |
tcagtgttagacactgccctggctgatgttcctccatgtccacggtaatgtttgtttgatagataagtaagcaagtgtttggttgag |
286 |
Q |
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| T |
495546 |
tcagtgttggactctgccctggctgatgtt----------caccataaggtttgtttgatagatatgtaagcaagtgtctggttgag |
495622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 503834 - 503895
Alignment:
| Q |
97 |
tgcttcacaaaatatgact--tgttgtatctagagttgaagttgctccaatgcaatgtgtgat |
157 |
Q |
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| T |
503834 |
tgcttaacaaaatatgactgatgttgtatctagagttgaagttgctccta-gcaatgtgtgat |
503895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 567
Target Start/End: Original strand, 495759 - 495848
Alignment:
| Q |
478 |
ttaatggctaattactttataaatgtgaaatgggtatttttaaatatttgtgatcaataaaagaatcaaaggatttagatgattgattat |
567 |
Q |
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| T |
495759 |
ttaagggcaaataactttataaatgcaaaatgattattttaaacaatttgtgatcacttaaagaattcaaggatttaaatgattgattat |
495848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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