View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19923_low_6 (Length: 549)

Name: NF19923_low_6
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19923_low_6
NF19923_low_6
[»] chr7 (11 HSPs)
chr7 (249-534)||(22884689-22884956)
chr7 (19-184)||(22884526-22884691)
chr7 (262-534)||(22887303-22887569)
chr7 (363-534)||(22803435-22803606)
chr7 (363-534)||(22869933-22870104)
chr7 (400-534)||(22829175-22829309)
chr7 (23-152)||(22799122-22799243)
chr7 (363-425)||(22807203-22807265)
chr7 (492-530)||(22874163-22874201)
chr7 (262-295)||(22803342-22803375)
chr7 (468-505)||(22807278-22807315)
[»] chr1 (3 HSPs)
chr1 (105-167)||(21152802-21152864)
chr1 (478-533)||(21152387-21152442)
chr1 (255-345)||(21152509-21152594)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 9e-93; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 249 - 534
Target Start/End: Original strand, 22884689 - 22884956
Alignment:
Q  249 ctattcgaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttct 348  Q
    ||||| |||||||||||||||||| ||||||||| |||||||| |||||| ||      |||||||||||||||||||||||||||||||||||||||||    
T  22884689 ctatttgaaagtcatcactgcatttgttggtatcatatgaagttgtccatgat-----ggtgattatgatctgttcaattttagggctcattctatttct 22884783  T
Q  349 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  22884784 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagc------------t 22884871  T
Q  449 tagcacaaatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttg 534  Q
    |||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  22884872 tagcacaaataggatttttgaagttatttagtggttgccttatcgcatttgaagg-tttgcaggttatttctttgtttaccctttg 22884956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 22884526 - 22884691
Alignment:
Q  19 ataagatggattctttgatcctttgtaatctatgattaaatgattgggttattgatgagtgataattatgcatttcgaaatgaacttaggaataaaacga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  22884526 ataagatggattctttgatcctttataatctatgattaaatggttgcgttattgatgagtcataattatgcatttcgcattgaacttaggaataaaacga 22884625  T
Q  119 ttaattcttaaatcaagtagaacttctctttcatgaatgttgtgttcattaaccagtgattagcta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  22884626 ttaattcttaaatcaagtagaacttctctttcatgaatgttgtgttcaataatcggtgattagcta 22884691  T

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Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 262 - 534
Target Start/End: Original strand, 22887303 - 22887569
Alignment:
Q  262 atcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttctatgcatcctgata 361  Q
    ||||| |||||||||||||  |||||||||||||||| ||||||||     |||||| |||||||||||||||||||||||||       ||||| | ||    
T  22887303 atcacagcattcgttggtaaagtatgaagtcgtccatgatagtgat-----tatgatgtgttcaattttagggctcattctata------catcccgtta 22887391  T
Q  362 actta------tatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcaca 455  Q
    |||||      |||| |||||||||||| |||||||||||  | |||||| |||| |||  ||||||||| || |||||||| |  |||||||||| |||    
T  22887392 acttaatcttatatgtgcatatgcagaactactgaagtgttgaagaaaatcgaacgagtaaaggagaaaagatgaagagcttgtttgagtctttagaaca 22887491  T
Q  456 aatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttg 534  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  22887492 aatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggttatttcttagtttaccctttg 22887569  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 363 - 534
Target Start/End: Original strand, 22803435 - 22803606
Alignment:
Q  363 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 462  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22803435 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22803534  T
Q  463 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttg 534  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  22803535 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttg 22803606  T

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Target: chr7; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 363 - 534
Target Start/End: Original strand, 22869933 - 22870104
Alignment:
Q  363 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 462  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22869933 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22870032  T
Q  463 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttg 534  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  22870033 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttg 22870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 400 - 534
Target Start/End: Original strand, 22829175 - 22829309
Alignment:
Q  400 gaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaatttcggaagttatttagtggttgccttattgcatttg 499  Q
    |||| |||||| |||| ||||||||| || |||||||| || |||||||||||||||| | |||||| |||||||||||||| |||  ||||||||||||    
T  22829175 gaaattagaacgagtggaggagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtgattggtttattgcatttg 22829274  T
Q  500 aaggttttgcagattatttctttgtttaccctttg 534  Q
    |||||||| ||| ||||||||||| ||||||||||    
T  22829275 aaggttttacaggttatttctttgattaccctttg 22829309  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 22799122 - 22799243
Alignment:
Q  23 gatggattctttgatcctttgtaatctatgattaaatgattgggttattgatgagtgataattatgcatttcgaaatgaacttaggaataaaacgattaa 122  Q
    |||| ||||||||||||||| || ||||||||     || || ||||| |||||||||||||||||||| ||  ||||||  ||  ||||||| ||||      
T  22799122 gatgaattctttgatcctttatactctatgat-----gactgtgttatcgatgagtgataattatgcatgtcacaatgaatgtacaaataaaatgatt-- 22799214  T
Q  123 ttcttaaatcaagtagaacttctctttcat 152  Q
     ||||||||||||||||| |||||||||||    
T  22799215 -tcttaaatcaagtagaatttctctttcat 22799243  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 22807203 - 22807265
Alignment:
Q  363 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaa 425  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||| |||| |||||||||    
T  22807203 cttatatgtgcatatgcagaattactgaagtatccaataaaataaaacgagtggaggagaaaa 22807265  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 22874163 - 22874201
Alignment:
Q  492 tgcatttgaaggttttgcagattatttctttgtttaccc 530  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  22874163 tgcatttgaaggtttttcaggttatttctttgtttaccc 22874201  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 22803342 - 22803375
Alignment:
Q  262 atcactgcattcgttggtatcgtatgaagtcgtc 295  Q
    |||| |||||||||||||||||||||||||||||    
T  22803342 atcattgcattcgttggtatcgtatgaagtcgtc 22803375  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 505
Target Start/End: Original strand, 22807278 - 22807315
Alignment:
Q  468 gaagttatttagtggttgccttattgcatttgaaggtt 505  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  22807278 gaagttatctagtggttggcttattgcatttgaaggtt 22807315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 21152864 - 21152802
Alignment:
Q  105 taggaataaaacgattaattcttaaatcaagtagaacttctctttcatgaatgttgtgttcat 167  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  21152864 taggaataaaacgatgaattcttaaatcaaggagaacctctctttcatgaatgttgtgttcat 21152802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 533
Target Start/End: Complemental strand, 21152442 - 21152387
Alignment:
Q  478 agtggttgccttattgcatttgaaggttttgcagattatttctttgtttacccttt 533  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  21152442 agtggttgccttattgcatttgaaggttttgcaggttatttatttggttacccttt 21152387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 21152594 - 21152509
Alignment:
Q  255 gaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatt 345  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||     |||||||| || ||||| ||||||||||| ||||||||    
T  21152594 gaaattcatcactgcattcgttggtatcgtatgaagtcgtctatgata-----gtgattatcatgtgttccattttagggcttattctatt 21152509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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