View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19923_low_8 (Length: 425)
Name: NF19923_low_8
Description: NF19923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19923_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 34263676 - 34264071
Alignment:
| Q |
14 |
ctatgaagaaagaagattgtggtaaacctgtaatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaaga |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34263676 |
ctatgaagaaagaagattgtggtaaacctgtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaaga |
34263775 |
T |
|
| Q |
114 |
ccaagaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
34263776 |
ccaagaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaatttg------tgtttgtgtttgtgcagtgccattttgggtaattatca |
34263869 |
T |
|
| Q |
214 |
gtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttt |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34263870 |
gtgtaaatgcttatgaatgactgttgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttt |
34263969 |
T |
|
| Q |
314 |
tttctattatttcatcccatgacatcggtgtcttttcctcctcaattgaatgagattccgatacagtgatttgtgctgaaccttccattgctattgtctg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
34263970 |
tttctattatttcatcccatgacatcggtgtcttttcctcctcaattgaatgagattccgatacagtgatttgtgctgaaccctccattgctattgtgtg |
34264069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 35622597 - 35622807
Alignment:
| Q |
17 |
tgaagaaagaagattgtggtaaacctgtaatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaagacca |
116 |
Q |
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|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
35622597 |
tgaagaaagaagattgtggtaaacctatgacgaatgtgctagcacattcaagattccaataagaaatgattgtgtttgaagagtgtgtgtcccaagacca |
35622696 |
T |
|
| Q |
117 |
agaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtcagtg |
216 |
Q |
| |
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||| ||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35622697 |
agaggatcttgggagtttgcaaatatcagaggatgaagaacatgatgaa------tttgtgtttgtgtttgtgcagtgccattttgggtaattatcagtg |
35622790 |
T |
|
| Q |
217 |
taaatgcttatgaatga |
233 |
Q |
| |
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||||||||||||||||| |
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| T |
35622791 |
taaatgcttatgaatga |
35622807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 335
Target Start/End: Original strand, 35622991 - 35623098
Alignment:
| Q |
228 |
gaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttttttctattatttca |
327 |
Q |
| |
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|||||| || ||||||||||||||||| || | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
35622991 |
gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca |
35623090 |
T |
|
| Q |
328 |
tcccatga |
335 |
Q |
| |
|
|||||||| |
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|
| T |
35623091 |
tcccatga |
35623098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 14543122 - 14542739
Alignment:
| Q |
14 |
ctatgaagaaagaagattgtggtaaacctgtaatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaaga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14543122 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcccaaga |
14543023 |
T |
|
| Q |
114 |
ccaagaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtca |
213 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||| ||| |||| |||||||||||||||||||||||||| ||| |
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| T |
14543022 |
ccaagaagatcttgggagtttgcatatatcagaggatgaagtgcatattgaa------------------tttgtgcagtgccattttgggtaattatca |
14542941 |
T |
|
| Q |
214 |
gtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttt |
313 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
14542940 |
gtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttt |
14542841 |
T |
|
| Q |
314 |
tttctattatttcatcccatgac---atcggtgtcttttcctcctcaa---ttgaatgagattccgatacagtgatttgtgctgaaccttccattgctat |
407 |
Q |
| |
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||||||| ||| ||||||||||| || ||| ||||||| | ||||| | ||||||||||| | |||| | |||||| ||||||||||||||||||| |
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|
| T |
14542840 |
tttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccattgctat |
14542741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 14580465 - 14580848
Alignment:
| Q |
14 |
ctatgaagaaagaagattgtggtaaacctgtaatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaaga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14580465 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcccaaga |
14580564 |
T |
|
| Q |
114 |
ccaagaagatcttgagagtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtca |
213 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||| ||| |||| |||||||||||||||||||||||||| ||| |
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| T |
14580565 |
ccaagaagatcttgggagtttgcatatatcagaggatgaagtgcatattgaa------------------tttgtgcagtgccattttgggtaattatca |
14580646 |
T |
|
| Q |
214 |
gtgtaaatgcttatgaatgactgctgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttt |
313 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
14580647 |
gtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttt |
14580746 |
T |
|
| Q |
314 |
tttctattatttcatcccatgac---atcggtgtcttttcctcctcaa---ttgaatgagattccgatacagtgatttgtgctgaaccttccattgctat |
407 |
Q |
| |
|
||||||| ||| ||||||||||| || ||| ||||||| | ||||| | ||||||||||| |||| | |||||| ||||||||||||||||||| |
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|
| T |
14580747 |
tttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaagtacattaatttgtactgaaccttccattgctat |
14580846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 46 - 335
Target Start/End: Complemental strand, 37600050 - 37599767
Alignment:
| Q |
46 |
atgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcccaagaccaagaagatcttgagagtttgcaaatatcag |
145 |
Q |
| |
|
||||||||| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37600050 |
atgaatgtgttaacacattcaagattccagttagaaatgattgtgtttgaagggtgtgtgtcccaagaccaagaagatctctagagtttgcaaatatcag |
37599951 |
T |
|
| Q |
146 |
aggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtcagtgtaaatgcttatgaatgactgctgtgcatc |
245 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| | || || ||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
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|
| T |
37599950 |
aggatggagtacatgatgaatttgtgtttgtgtctatg------caatgccattttgggtaattatcagtgtaaatgcttataaatgactcttgtgcatc |
37599857 |
T |
|
| Q |
246 |
aaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttttttctattatttcatcccatga |
335 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
37599856 |
aaagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttgataaaaaaatttctataatttcatcccatga |
37599767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 37605591 - 37605482
Alignment:
| Q |
131 |
gtttgcaaatatcagaggacgaagtacatgatgaatttgtgtttgtgtttgtgtttgtgcagtgccattttgggtaattgtcagtgtaaatgcttatgaa |
230 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||| |
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|
| T |
37605591 |
gtttgcaaatatcagaggatggagtgcatgatgaatttgtgt--------gtgtttgtgcagtgccattttgggtaattatcaaggtaaatgcctgtgaa |
37605500 |
T |
|
| Q |
231 |
tgactgctgtgcatcaaa |
248 |
Q |
| |
|
||| || ||||||||||| |
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|
| T |
37605499 |
tgattgttgtgcatcaaa |
37605482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 10404129 - 10404054
Alignment:
| Q |
14 |
ctatgaagaaagaagattgtggtaaacctgtaatgaatgtgctagcacattcaagattccaatgagaaatgattgt |
89 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| | || |||||||||||| |||| ||||| |||||||| |
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|
| T |
10404129 |
ctatgaagaatgaagattgtggtaaacctgtgatgaagctacttgcacattcaagactccattgagatatgattgt |
10404054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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