View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_high_13 (Length: 452)
Name: NF19924_high_13
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_13 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 6984057 - 6984502
Alignment:
| Q |
1 |
acgccacacaatctcttcttctccacgatcacctctcattcactactcatcaatttgtttctcacgttcacaccctctccaaacacggcctacaatcact |
100 |
Q |
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| T |
6984057 |
acgccacacaatctcttcttctccacgatcacatctcattcactactcatcaatttgtttctcacgttcacaccctctgcaaacacggcctacaatcact |
6984156 |
T |
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| Q |
101 |
cctcactcaccactttctcaatgtcctagaggttcgatcatactcaacaaaccatttcactttgagtgtctataaatttaacctctttcactttttacat |
200 |
Q |
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| T |
6984157 |
cctcactccccactttctcaaagtcttagaggttcgatcatactcaacaaaccatttcactttgagtgtatataaatttaa-ctctttcactttttacat |
6984255 |
T |
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| Q |
201 |
tacaaagtttgaatttttattgatccttttggctgcaggaaacgtttgagcgaaatggggtatcgagattctggcagcattttgttccttacgctggttt |
300 |
Q |
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| T |
6984256 |
tacaaagtttgaa-ttttattgacccctttgcccgcaggaaacgtttgagcgaaatggggcattgaggttttggcagcattttgttccttacgctggttt |
6984354 |
T |
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| Q |
301 |
gaacaagaatga------caatgtgagtgtttgtttatgaacctaagtttaaattttggtttttagttgctacaatgtttgattttttgtgttaaataac |
394 |
Q |
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| T |
6984355 |
gaacaataatgatgatatcaatgtgagtgtttgtttatgaacctaggtttaaattttggtttgtagttgctacaa----------tttgtgttaaataac |
6984444 |
T |
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| Q |
395 |
tgaaacagattgatgaagatgagattgagagtgtgttgtgtaatgccttggaagaaat |
452 |
Q |
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| T |
6984445 |
tgaaacagattgatgaagatgagattgagagtgtgttgtgtaatgctttggaagaaat |
6984502 |
T |
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 31900992 - 31900935
Alignment:
| Q |
395 |
tgaaacagattgatgaagatgagattgagagtgtgttgtgtaatgccttggaagaaat |
452 |
Q |
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| T |
31900992 |
tgaaacagattgatgaggatgagattgagagtgtgctgtgtaatgctttggaagaaat |
31900935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 31964788 - 31964731
Alignment:
| Q |
395 |
tgaaacagattgatgaagatgagattgagagtgtgttgtgtaatgccttggaagaaat |
452 |
Q |
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| T |
31964788 |
tgaaacagattgatgaggatgagattgagagtgtgctgtgtaatgctttggaagaaat |
31964731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 31965410 - 31965318
Alignment:
| Q |
204 |
aaagtttgaatttttattgatccttttggctgcaggaaacgtttgagcgaaatggggtatcgagattctggcagcattttgttccttacgctg |
296 |
Q |
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| T |
31965410 |
aaagtatgaatttttattgatttctttggttgtaggaaacttttgaacgaaatgggtcatcgaggttttggcggcattttgttccttatgctg |
31965318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 31901551 - 31901459
Alignment:
| Q |
204 |
aaagtttgaatttttattgatccttttggctgcaggaaacgtttgagcgaaatggggtatcgagattctggcagcattttgttccttacgctg |
296 |
Q |
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||||||| ||||||||||||| |||| || ||||||| ||||| ||||| ||| |||||| || |||| ||||||||||||||| |||| |
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| T |
31901551 |
aaagtttcaatttttattgatttctttgtttgtaggaaacttttgaacgaaacgggtcatcgaggttttggcggcattttgttccttatgctg |
31901459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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