View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_high_16 (Length: 402)
Name: NF19924_high_16
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 1459990 - 1460370
Alignment:
| Q |
20 |
gttccgacgaattcgagagctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagaga |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1459990 |
gttccgacaaattcgagagctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagaga |
1460089 |
T |
|
| Q |
120 |
gaatgtgaactaggatatcatctggtaaaatgctgatcctatctacctcctcctccacagcctccaccgttgaagtttccggctgagacattctgttacg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1460090 |
gaatgtgaactaggatatcatctggtaaaatgctgatcctatctacctcctcctccatagcctccaccgctgaagtttccggctgagacattctgttacg |
1460189 |
T |
|
| Q |
220 |
acggcaaggtgttcttcatgattaggttgacaaacagggttagggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggt |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460190 |
acggcaaggtgttcttcatgattaggttgacagacagggttagggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggt |
1460289 |
T |
|
| Q |
320 |
ttacacttgaattgggttgggccgtatttca------ccaaatccaaatcaatcagttgtctttagaaaattattcatctc |
394 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460290 |
ttacacttgaattgggttgggccgtatttcaccaaatccaaatccaaatcaatcagttgtctttagaaaattattcatctc |
1460370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 12094206 - 12094079
Alignment:
| Q |
39 |
ctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatc |
138 |
Q |
| |
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| T |
12094206 |
ctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaagaagacagaatgtgaatcaggatatc |
12094107 |
T |
|
| Q |
139 |
atctggtaaaatgctgatcctatctacc |
166 |
Q |
| |
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||||||||| ||||||||||||||||| |
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| T |
12094106 |
gtctggtaaattgctgatcctatctacc |
12094079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 1446672 - 1446786
Alignment:
| Q |
51 |
accatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaat |
150 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| | |
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| T |
1446672 |
accatagatgcttccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaact |
1446771 |
T |
|
| Q |
151 |
gctgatcctatctac |
165 |
Q |
| |
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||| ||||||||||| |
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| T |
1446772 |
gcttatcctatctac |
1446786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 12104530 - 12104419
Alignment:
| Q |
55 |
tagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctg |
154 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||| |
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| T |
12104530 |
tagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcgtctgataaattgctg |
12104431 |
T |
|
| Q |
155 |
atcctatctacc |
166 |
Q |
| |
|
||| |||||||| |
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|
| T |
12104430 |
atcatatctacc |
12104419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 820515 - 820412
Alignment:
| Q |
63 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
162 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||| |||| || ||||||||| |||| ||||||||||| ||||| || |||||||||| |
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| T |
820515 |
tccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagagaatatgaatcaggatatcatccagtaaactgttgatcctatc |
820416 |
T |
|
| Q |
163 |
tacc |
166 |
Q |
| |
|
|||| |
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|
| T |
820415 |
tacc |
820412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 409234 - 409117
Alignment:
| Q |
49 |
acaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaa |
148 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||||||||| || || || ||||||||| |
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| T |
409234 |
acaccatagatgagtccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaaa |
409135 |
T |
|
| Q |
149 |
atgctgatcctatctacc |
166 |
Q |
| |
|
| | |||||||||||| |
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|
| T |
409134 |
cttccaatcctatctacc |
409117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 997449 - 997570
Alignment:
| Q |
41 |
ggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcat |
140 |
Q |
| |
|
|||||| | ||| ||||||| |||||| ||||||||||| |||||| | ||||||||||||||||||| | |||||||||||| | |||||| || | |
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| T |
997449 |
ggaacgtggcactatagattaatccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggatctcgt |
997548 |
T |
|
| Q |
141 |
ctggtaaaatgctgatcctatc |
162 |
Q |
| |
|
| |||||| | | ||||||||| |
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|
| T |
997549 |
ccggtaaacttccgatcctatc |
997570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 975622 - 975723
Alignment:
| Q |
63 |
tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc |
162 |
Q |
| |
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|||||| ||||||||||| |||||| ||| ||||||||| ||||||||| |||||||||| ||| ||||| || || || ||| |||| |||||||| |
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| T |
975622 |
tccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggatgtcgtcgggaaaactgctaatcctatc |
975721 |
T |
|
| Q |
163 |
ta |
164 |
Q |
| |
|
|| |
|
|
| T |
975722 |
ta |
975723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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