View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_high_2 (Length: 770)
Name: NF19924_high_2
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 15 - 647
Target Start/End: Complemental strand, 10399393 - 10398761
Alignment:
| Q |
15 |
acacaccaccaccacccttaatatttgatgaaaaaatgaaacttttgggtaaatttagcaattttccaagccaattcataacaatagtttcaagctcagt |
114 |
Q |
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| T |
10399393 |
acacaccaccaccacccttaatatttgatgaaaaaatgaaacttttgggtaaatttagcaattttccaagccaattcataacaatagtttcaagctcagt |
10399294 |
T |
|
| Q |
115 |
tgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcacctataaaccctgctatgctaccactactagggaagtaa |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10399293 |
tgcagctggtgatgataaccaattgaatccaacaacattgaatccagtgcttaacatttcacctataaaccctgctatgctaccactactagggaagtaa |
10399194 |
T |
|
| Q |
215 |
gcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaagtattgattcaattgattctggttgaaatggagctg |
314 |
Q |
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| T |
10399193 |
gcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaagtattgattcaattgattctggttgaaatggagctg |
10399094 |
T |
|
| Q |
315 |
aagatggtaatatttttgcaagataaccaggttctactttacttaaaacaggatagttttcaatgtttttgtaataatctgtaaggaaatcaatcataat |
414 |
Q |
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| T |
10399093 |
aagatggtaatatttttgcaagataaccaggttctactttacttaaaacaggatagttttcaatgtttttgtaataatctgtaaggaaatcaatcatcat |
10398994 |
T |
|
| Q |
415 |
gtatccttgtcttttgaattcttcaaggtcaagaggattcatggttttttgtggatcactttgaagagggttggaacttgatgtattcattgtatttgga |
514 |
Q |
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| T |
10398993 |
gtatccttgtcttttgaattcttcaaggtcaagaggattcatggttttttgtggatcactttgaggagggttggaacttgatgtattcattgtatttgga |
10398894 |
T |
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| Q |
515 |
tgcatgtaaaagcatgatccctcacatgtacatatatagggtactagttttatttattttttgacacaacaaattgggtagatgtttgtttcgttccatt |
614 |
Q |
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| T |
10398893 |
tgcatgtaaaagcatcatccctcacatgtacatatatagggtactagttttatttattttttgacacaacaaattgggtagatgtttgtttcgttccatt |
10398794 |
T |
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| Q |
615 |
aattgcatgtctaccataatgttagtaacaaaa |
647 |
Q |
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| T |
10398793 |
aattgcatgtctaccataatgctagtaacaaaa |
10398761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 659 - 738
Target Start/End: Complemental strand, 10397691 - 10397612
Alignment:
| Q |
659 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgatctccttttttct |
738 |
Q |
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| T |
10397691 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgatctccttttttct |
10397612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 659 - 738
Target Start/End: Original strand, 10398084 - 10398163
Alignment:
| Q |
659 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgatctccttttttct |
738 |
Q |
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| T |
10398084 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgatctccttttttct |
10398163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 659 - 726
Target Start/End: Complemental strand, 10398321 - 10398254
Alignment:
| Q |
659 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgat |
726 |
Q |
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| T |
10398321 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgat |
10398254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 21197804 - 21197605
Alignment:
| Q |
80 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
179 |
Q |
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| T |
21197804 |
ccaagccaatctataacaacattttctagttctgtagcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgcttaacatttctccta |
21197705 |
T |
|
| Q |
180 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
279 |
Q |
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| T |
21197704 |
agaaccctgctgtgctaccacttgatggaaaataagcaaagtaattaggactttgccaatgtgttatacctgggattatgtatttttgataatcttcaag |
21197605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 21197540 - 21197448
Alignment:
| Q |
344 |
ggttctactttacttaaaacaggatagttttcaatgtttttgtaataatctgtaaggaaatcaatcataatgtatccttgtcttttgaattct |
436 |
Q |
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| T |
21197540 |
ggttctacttgacttaggacaggatagtttgaaatgttttcataataatcagcaaggaaatcaatcatcatgtgaccttgtttcttgaattct |
21197448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 11014738 - 11014539
Alignment:
| Q |
80 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
179 |
Q |
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| T |
11014738 |
ccaagccaatctataacaacattttctagttctgttgcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgctcaatatttctccta |
11014639 |
T |
|
| Q |
180 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
279 |
Q |
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| T |
11014638 |
agaaccctgctgtgctaccacttgagggaaaataagcaaagtaatttggactttgccaatgtgttatacctgggattatgtgcttttgataatcttcaag |
11014539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 11004410 - 11004211
Alignment:
| Q |
80 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
179 |
Q |
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| T |
11004410 |
ccaagccaatctataacaacattttctagttctgtggcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgctcaatatttctccta |
11004311 |
T |
|
| Q |
180 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
279 |
Q |
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| T |
11004310 |
agaaccctgctgtgctaccacttgagggaaaataagcaaagtaatttggactttgccaatgtgttatacctgggattatgtgcttttgataatcttcaag |
11004211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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