View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_high_26 (Length: 334)
Name: NF19924_high_26
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_26 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 16569139 - 16568824
Alignment:
| Q |
1 |
tataataattgtttatcattgtcgttcataatagataatggatttaattcatgtacaccgcctgtcaatcaatcgtaatcatcagatcattaagaacgtt |
100 |
Q |
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| T |
16569139 |
tataataactgtttatcattgtcgttcataatagataatggatttaattcatgtacaccgtctgtcaatcaatcgtaatcatcagatcattaagaacgtt |
16569040 |
T |
|
| Q |
101 |
tgtgtaatactttttacgcagtgtattaaaattaaactcatagataattagacatattattatatatcaagcgttgatcttcgaatacctattgtaaaat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
16569039 |
tgtgtaatactttttacgcagtgtatcaaaattaaactcatagataattagacatattataatatatcaaacgttgatcttcgaatacctattataaaat |
16568940 |
T |
|
| Q |
201 |
ggatattttgtataattactaattgtgaaactattaggagttgcactttgcatttaccaatttttcatataccgttctgttgagaaagcttgtggaccaa |
300 |
Q |
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| T |
16568939 |
ggatattttgtataattactaattgtgaaactattaggagttgcactttgcatttaccaatttttcatatacccttctgttgagaaagcttgtggaccaa |
16568840 |
T |
|
| Q |
301 |
ttggctttgtgcgaat |
316 |
Q |
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| T |
16568839 |
ttggctttgcgcgaat |
16568824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 16527458 - 16527255
Alignment:
| Q |
102 |
gtgtaatactttttacgcagtgtattaaaattaaactcatagataattagacatattattatatatcaagcgttgatcttcgaatacctattgtaaaatg |
201 |
Q |
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| T |
16527458 |
gtgtaaaactttttaagcaatgtatcaaaattaaactcagagataattagatatatttttatat--caagttttgatctttgaatagctattataaaata |
16527361 |
T |
|
| Q |
202 |
gatattttgtataattactaattgtg--aaactattaggagttgcactttgcatttaccaatttttcatataccgttctgttgagaaagcttgtggacca |
299 |
Q |
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| T |
16527360 |
gatattttgtataattactaattgtgtgaaattattaggagttgcactttgcatctaccaacttttcatatacccttctgttgaaaaagcttgtggacct |
16527261 |
T |
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| Q |
300 |
attggc |
305 |
Q |
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|||||| |
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| T |
16527260 |
attggc |
16527255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 16587774 - 16587676
Alignment:
| Q |
207 |
tttgtataattactaa--ttgtgaaactattaggagttgcactttgcatttaccaatttttcatataccgttctgttgagaaagcttgtggaccaattg |
303 |
Q |
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| T |
16587774 |
tttgtatagttactaactttgtgaaattattaggagttgcactttgcatctaccaacttttcatatacccatatgtggaaaaagcttgtggacctattg |
16587676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16527640 - 16527589
Alignment:
| Q |
1 |
tataataattgtttatcattgtcgttcataatagataatggatttaattcat |
52 |
Q |
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| T |
16527640 |
tataataactgtttatcattgtcggtcataatagataatggatttaattcat |
16527589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 16527552 - 16527515
Alignment:
| Q |
65 |
tcaatcaatcgtaatcatcagatcattaagaacgtttg |
102 |
Q |
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| T |
16527552 |
tcaatcaatcgtaatcatcagatcattaagaacgtttg |
16527515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 5 - 311
Alignment:
| Q |
10 |
tgtttatcattgtcgttcataatagataatggatttaattcatgtacaccgcctgtcaatcaatcgtaatcatcagatcattaagaacgtttgtgtaata |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5 |
tgtttatcattgtcgttcataatagataatggatttaattcatgtacaccgtctgtcaatcaatcgtaatcatcagatcattaagaacgtttgtgtaata |
104 |
T |
|
| Q |
110 |
ctttttacgcagtgtattaaaattaaactcatagataattagacatattattatatatcaagcgttgatcttcgaatacctattgtaaaatggatatttt |
209 |
Q |
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| T |
105 |
ctttttacgcagtgtatcaaaattaaactcatagataattagacatattataatatatcaaacgttgatcttcgaatacctattataaaatggatatttt |
204 |
T |
|
| Q |
210 |
gtataattactaattgtgaaactattaggagttgcactttgcatttaccaatttttcatataccgttctgttgagaaagcttgtggaccaattggctttg |
309 |
Q |
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| T |
205 |
gtataattactaattgtgaaactattaggagttgcactttgcatttaccaatttttcatatacccttctgttgagaaagcttgtggaccaattggctttg |
304 |
T |
|
| Q |
310 |
tgcgaat |
316 |
Q |
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|||||| |
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| T |
305 |
cgcgaat |
311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 33433793 - 33433827
Alignment:
| Q |
65 |
tcaatcaatcgtaatcatcagatcattaagaacgt |
99 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
33433793 |
tcaatcaatcgtaatcatcagatcattaaaaacgt |
33433827 |
T |
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