View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_high_35 (Length: 253)
Name: NF19924_high_35
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 38085420 - 38085528
Alignment:
| Q |
137 |
tgtaaaaaataattcccattggtttaattttgttgtatttgcacgaaaagtaaattgccagtacaaatttatagaactaattcaagatttacagaattaa |
236 |
Q |
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| T |
38085420 |
tgtaaaaaataattcccattggtttaattttgttgtatttccacgaaaagtaaattgccagtacaaatttatagaactaattcaagatttacagaattaa |
38085519 |
T |
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| Q |
237 |
agaattatg |
245 |
Q |
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| T |
38085520 |
agaattatg |
38085528 |
T |
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Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38085318 - 38085422
Alignment:
| Q |
1 |
caaccatgaatcaaaagaataatgctaccaatctttttgggttacatacatgaaaatatgaccgtatataaaattatttttaacaatccagtaaactaaa |
100 |
Q |
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| T |
38085318 |
caaccatgaatcaaaagaataatgctaccaatctttttgggttacatacatgaaaatacgaccgtatataaaattatttttaacaatccagtaaactaaa |
38085417 |
T |
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| Q |
101 |
tgtgt |
105 |
Q |
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||||| |
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| T |
38085418 |
tgtgt |
38085422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 38090469 - 38090596
Alignment:
| Q |
115 |
attaatttatgcattggcttattgtaaaaaataattcccattggtttaattttgttgtatttgcacgaaaagtaaattgccagtacaaatttatagaact |
214 |
Q |
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|||||||||| || |||||||||||| |||| |||||||||| |||||||||||||||| || ||||||||||| |||| |||||||||||| |||| |
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| T |
38090469 |
attaatttatacagtggcttattgtataaaaa---tcccattggtataattttgttgtatttccaggaaaagtaaatagccaatacaaatttataaaact |
38090565 |
T |
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| Q |
215 |
aattcaagatttacagaattaaagaattatg |
245 |
Q |
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| T |
38090566 |
aattcaagatgtatagaattaaagaattatg |
38090596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 38090284 - 38090342
Alignment:
| Q |
34 |
tttttgggttacatacatgaaaatatgaccgtatataaaattatttttaacaatccagt |
92 |
Q |
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|||| |||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
38090284 |
ttttagggttaaatacatgaaaacatgacagtatataaaattacttttaacaatccagt |
38090342 |
T |
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