View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_high_37 (Length: 252)

Name: NF19924_high_37

Description: NF19924

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19924_high_37

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 39 - 252

Target Start/End: Original strand, 36322072 - 36322286

Alignment:

Q	39	ccgaaactggtttctaattttgtcatttcaaa-cacttaacggaaaatttagaaattaatttcatattttttcgtcgctaattcaactttatgtagtagc	137	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322072	ccgaaactggtttctaattttggcatttcaaaacacttaacggaaaatttagaaattaatttcatattttttcatcgctaattcaactttatgtagtagc	36322171	T

Q	138	tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaaga	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322172	tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaaga	36322271	T

Q	238	actgtgagacataaa	252	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36322272	gctgtgagacataaa	36322286	T

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Target: chr8; HSP #2

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 158 - 248

Target Start/End: Original strand, 36329052 - 36329146

Alignment:

Q	158	ttaatcattaatattatgtatgtccatacatg----caggaagaagagctagttgatggaaaagttgattggaaaggaagaagaactgtgagaca	248	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	36329052	ttaattattaatattatgtatgtccatgcatgcatgcaggaagaagagttagttgatggaaaagttgattggagaggaagaagagctgtgagaca	36329146	T

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