View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19924_high_4 (Length: 702)

Name: NF19924_high_4
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19924_high_4
NF19924_high_4
[»] chr3 (9 HSPs)
chr3 (9-684)||(23032043-23032714)
chr3 (9-240)||(23016835-23017062)
chr3 (9-218)||(23038836-23039041)
chr3 (9-176)||(23036007-23036170)
chr3 (9-176)||(23145757-23145920)
chr3 (9-176)||(23148595-23148758)
chr3 (8-172)||(23024113-23024273)
chr3 (8-176)||(23139883-23140047)
chr3 (505-564)||(23038746-23038805)
[»] scaffold0554 (1 HSPs)
scaffold0554 (9-211)||(6754-6952)
[»] chr6 (1 HSPs)
chr6 (9-176)||(21779650-21779813)
[»] scaffold0059 (1 HSPs)
scaffold0059 (10-146)||(62020-62152)
[»] chr1 (1 HSPs)
chr1 (9-146)||(12609772-12609905)


Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 9 - 684
Target Start/End: Complemental strand, 23032714 - 23032043
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23032714 gaagaatatgcccagggagtacatttggtttgagaaatat----tgagctggccctcgcgatgttgttgtatcattttgactggacgcttcctgatggaa 23032619  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatcttttactgattccacttgttcatcaacctttgaatgt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23032618 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatcttttactgattccacttattcatcaacctttgaatgt 23032519  T
Q  209 cacatgagctgtgcacgaagaaaatgaaacctttggttgtgaatagcttcgcatgatcttttatttcagggattcaaacacctaaaccctgttggccatg 308  Q
    ||||||||||  ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23032518 cacatgagcttcgcacgaagaaaatgaaacctttggtagtaaatagcttcccatgatcttttatttcagggattcaaacacctaaaccctgttgaccatg 23032419  T
Q  309 gaaatcaacatagtatggcttgtaagtttctataaatcaaaagcgagtttatgtttcctttttacaggcttaaggagttaacattgcgcgtcattacaag 408  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23032418 gaaatcaacatagtatggcttgtaagtttctataaatcgaaagcgagtttatgtttcctttttacaggcttgaggagttaacattgcgcgtcattacaag 23032319  T
Q  409 tataatattcacccaatattttgcatcttgtgcgatgatgaacaatttattttgtaaaacgatattcgaataagttgttgtatttgcatacagtaaaaat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23032318 tataatattcacccaatattttgcatcttgtgcgatgatgaacaatttattttgtaaaacgatattcgaataagttgttgtattttcatacagtaaaaat 23032219  T
Q  509 gttttggatctaaaatcccttagtttcgacttgataagttaattacctaccagccagccatctatctttcttgcaattttgttaatctatttgtataatc 608  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032218 attttggatctaaaatcacttagtttcgacttgataagttaattacctaccagccagccatctatctttcttgcaattttgttaatctatttgtataatc 23032119  T
Q  609 agttaattacctaatccatcttaattatctgtaagcacacatgttttgcattggaaaaacaaatggatgaggaaac 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032118 agttaattacctaatccatcttaattatctgtaagcacacatgttttgcattggaaaaacaaatggatgaggaaac 23032043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 23017062 - 23016835
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |    |||| |||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23017062 gaagaatatgccctgggagtacattcggtttgagaaatgt----tgagttggcccttgcgatgttgttgtatcattttgactggaagcttcccggtggaa 23016967  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatcttttactgattccacttgttcatcaacctttgaatgt 208  Q
    ||| | |||  ||||| |||||||||||| |||||||| || ||||||| ||||||||||| ||||||||  | ||  ||||| |||| |||||||||||    
T  23016966 tcaaatgtgacgaactggacatgactgagcaatttggagtcacaatgaggagaaaagatgaccttttactattgccttttgtttatcatcctttgaatgt 23016867  T
Q  209 cacatgagctgtgcacgaagaaaatgaaacct 240  Q
    || |||||||    | ||||||||||||||||    
T  23016866 cagatgagcttcagaagaagaaaatgaaacct 23016835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 23039041 - 23038836
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||||||||| ||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||| ||||||   |||||    
T  23039041 gaagaatatgcccagggagcacatttggtttgagaa----gtattgagctggcccttgcaatgttgttgtatcattttgactggaagcttccaagtggaa 23038946  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatcttttactgattccacttgttcatcaacctttgaatgt 208  Q
    ||||||||| |||  | || |||||||| ||||| |||  | |||||||||||||||||||||||||| || || |  ||||| |||| |||||| | ||    
T  23038945 tcagaagtgaagacttggatatgactgatgaattcggagccacaatgagaagaaaagatgatcttttattgttttcttttgtttatcatcctttgtaagt 23038846  T
Q  209 cacatgagct 218  Q
    || |||||||    
T  23038845 catatgagct 23038836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 23036170 - 23036007
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||||||||| ||||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||||| ||||||   |||||    
T  23036170 gaagaatatgcccagggagcacatttggtttgagaaatat----tgacatggcccttgcgatgttgttgtatcattttgactggaagcttccaagtggaa 23036075  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 176  Q
    ||| ||||| |||| | ||||||||||| |||||||||  | ||||||||||||| ||||| ||||||    
T  23036074 tcaaaagtgaagaattggacatgactgacgaatttggagccacaatgagaagaaaggatgaactttta 23036007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 23145920 - 23145757
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    |||||||||| |||||||| ||||||||||||| ||||||    |||||||| |||||| ||||| ||||||||||||||||||| |||||||  |||||    
T  23145920 gaagaatatgtccagggagcacatttggtttgacaaatat----tgagctggtccttgcaatgttattgtatcattttgactggaagcttcctagtggaa 23145825  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 176  Q
    | | | ||| |||| | || |||||||||||||||||| || |  |||||||||||||||||||||||    
T  23145824 taacaggtgaagaaatggatatgactgaggaatttggactcacggtgagaagaaaagatgatctttta 23145757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 23148758 - 23148595
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||||||||| | ||||||||||||||||||    |||||||||||| || ||||||||||||||||||||||||| ||||||   |||||    
T  23148758 gaagaatatgcccagggagcatatttggtttgagaaatat----tgagctggccctagcaatgttgttgtatcattttgactggaagcttcccagtggaa 23148663  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 176  Q
    | | | ||| |||| | || |||||||||||||||||| || |  |||| ||||||||||||||||||    
T  23148662 taacaggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatctttta 23148595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 23024273 - 23024113
Alignment:
Q  8 cgaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatgga 107  Q
    ||||||||||| |||||||| | |||||||||| ||| | |    |||||| |||||||| | ||||||||| |||||||| |||| ||||||| |||||    
T  23024273 cgaagaatatgtccagggagcatatttggtttgcgaagtgt----tgagctagcccttgcaaagttgttgtaccattttgattggaagcttcctaatgga 23024178  T
Q  108 atcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatct 172  Q
    |||| ||||| |||| | |||||||||||| ||||||| ||| || || | ||||||||||||||    
T  23024177 atcaaaagtgaagaattggacatgactgagaaatttggtatcacagtgtgtagaaaagatgatct 23024113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 23140047 - 23139883
Alignment:
Q  8 cgaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatgga 107  Q
    ||||||||||||||||| || | |||||||||||||||| |    |||| || ||||||| |  ||||||| | ||||||| |||| ||||||   ||||    
T  23140047 cgaagaatatgcccaggaagcatatttggtttgagaaatgt----tgagttgacccttgcaacattgttgttttattttgattggaagcttccgagtgga 23139952  T
Q  108 atcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 176  Q
    || ||||||| |||| | || ||||| |||||||||||| ||||| |||||||||||||||||||||||    
T  23139951 attagaagtgaagaattggatatgaccgaggaatttggagtcgcagtgagaagaaaagatgatctttta 23139883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 564
Target Start/End: Complemental strand, 23038805 - 23038746
Alignment:
Q  505 aaatgttttggatctaaaatcccttagtttcgacttgataagttaattacctaccagcca 564  Q
    ||||||||||||||   |||| |||||||| ||||| ||||||||||||||||| |||||    
T  23038805 aaatgttttggatcagcaatcacttagttttgacttaataagttaattacctacgagcca 23038746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 6754 - 6952
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||| |||||||| |||| |||||||||||||||| |    ||||||||| ||||||||||||||||||||||||||||||| ||||||   |||||    
T  6754 gaagaatttgcccaggaagtatatttggtttgagaaatgt----tgagctggcgcttgcgatgttgttgtatcattttgactggaagcttccatgtggaa 6849  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatcttttactgattccacttgttcatcaacctttgaatgt 208  Q
    ||| ||||| |||| | |||||||| |||||||||||| |  ||||||||||||| |||||||||| | || ||||   |||| |||| ||||||||| |    
T  6850 tcaaaagtgaagaattggacatgacagaggaatttggagttacaatgagaagaaaggatgatctttcattgtttccctctgtttatcatcctttgaattt 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 21779813 - 21779650
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    ||||||||||||||||||| ||||||||||||||||||||    ||||  | ||||||||||||||||||||||||||||||||| ||||||   ||| |    
T  21779813 gaagaatatgcccagggagcacatttggtttgagaaatat----tgagacgacccttgcgatgttgttgtatcattttgactggaagcttccaagtggga 21779718  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 176  Q
    ||| ||||| |||| | ||||||||||||||||| ||| || |||||| ||||||| | |||||||||    
T  21779717 tcaaaagtgaagaattggacatgactgaggaattcggagtcacaatgaaaagaaaaaacgatctttta 21779650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 62152 - 62020
Alignment:
Q  10 aagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaat 109  Q
    ||||||||||||||| |||| |||||||||||  | | |    ||||||||| ||||| |||||||||||||| ||||| |||| ||||||  |||||||    
T  62152 aagaatatgcccaggcagtaaatttggtttgatgagtct----tgagctggcacttgcaatgttgttgtatcactttgattggaagcttcccaatggaat 62057  T
Q  110 cagaagtgcagaactagacatgactgaggaatttgga 146  Q
     | | ||| |||  | |||||||||||| ||||||||    
T  62056 gaaatgtgaagacttggacatgactgagaaatttgga 62020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 12609905 - 12609772
Alignment:
Q  9 gaagaatatgcccagggagtacatttggtttgagaaatatatattgagctggcccttgcgatgttgttgtatcattttgactggacgcttcctgatggaa 108  Q
    |||||||||| ||||| || ||||||||||||    ||| || ||||| |||| |||||  || |||||||||| ||||| |||| ||||||  ||||||    
T  12609905 gaagaatatgtccaggtagcacatttggtttg----ataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatggaa 12609810  T
Q  109 tcagaagtgcagaactagacatgactgaggaatttgga 146  Q
    | | | |||  ||  |||||||||||||| ||||||||    
T  12609809 tgaaaggtgaggacttagacatgactgagcaatttgga 12609772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University