View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19924_high_8 (Length: 503)
Name: NF19924_high_8
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 236 - 486
Target Start/End: Complemental strand, 31670988 - 31670729
Alignment:
| Q |
236 |
ctcacaagatatcaacactatagaaacaaaaaatatttctaaaactcttttactcaatttctttgtctcatgttttgaattacattctaacttcat---- |
331 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
31670988 |
ctcacaagatatcaacactgtagaaacaaaaaatatttctaaaactcttttactcaatttctttgtctcatgtttggaattacattcgaacttcattaaa |
31670889 |
T |
|
| Q |
332 |
-----gtgtgatattacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatctt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31670888 |
ttcttgtgtgatattacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatctt |
31670789 |
T |
|
| Q |
427 |
aattcttttttaagcaatatcaacaaagaaatgatttacttaattaatccatgtaaaaat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31670788 |
aattcttttttaagcaatatcaacaaagaaatgatttacttaattaatccatgtaaaaat |
31670729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 31671259 - 31671195
Alignment:
| Q |
7 |
agagagaagaaaaacaatagaaagaactaacatagggaaagtgagtcgagactttgatgtgaaaa |
71 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31671259 |
agagcgaagaaaaataatagaaagaactaacatagggaaagtgagtcgagactttgatgtgaaaa |
31671195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 464
Target Start/End: Complemental strand, 29130880 - 29130759
Alignment:
| Q |
339 |
attacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatcttaattctttttta |
438 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||| || |||||| ||||||||| | ||| | ||| ||||| ||||||||||||| | ||||| |
|
|
| T |
29130880 |
attacttgtgttttaagtctcaacagtttgagttttaatac--aaataattaaggttgacg-tttgtcatttatatagaaactatcttaatt-tatttta |
29130785 |
T |
|
| Q |
439 |
agcaatatcaacaaagaaatgattta |
464 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
29130784 |
agcaattgcaacaaagaaatgattta |
29130759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 29121037 - 29120986
Alignment:
| Q |
417 |
gaactatcttaattcttttttaagcaatatcaacaaagaaatgatttactta |
468 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
29121037 |
gaactttcttaattcatttttaagcaatagtaacagagaaatgatttactta |
29120986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 29126408 - 29126334
Alignment:
| Q |
243 |
gatatcaacactatagaaacaaaaaatatttctaaaactcttttactcaatttctttgtctcatgttttgaattac |
318 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| | ||||||||||| | ||||| || |||||| |||||| |
|
|
| T |
29126408 |
gatatcaacactctagaaacaacaaatatttctaaatat-ttttactcaatatttttgtttcgtgttttaaattac |
29126334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University