View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_12 (Length: 469)
Name: NF19924_low_12
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 41249409 - 41249851
Alignment:
| Q |
1 |
aggaacacaaacaaacttgttattgttagaccaaattaaatatatcactataaactctaaggcagactcgttttgctggtcctctcatatttctgatcgt |
100 |
Q |
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| T |
41249409 |
aggaacacaaacaaacttgttattgttagaccaaat-----atatcactataaactctaaggcagactcgttttgctggtcctctcatatttctgatcgt |
41249503 |
T |
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| Q |
101 |
gatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggttgctaatcagtacattacatggatatcttgcttggatataattggtac |
200 |
Q |
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| T |
41249504 |
gatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggtttctaatcagtacattacatggatatcttgcttggatataattggtac |
41249603 |
T |
|
| Q |
201 |
ttgcaacgtggttgtattccttttcttgtatatatgtacctatacactgtaaatttgctctgttctctatcttttgatgaaataatggacggtctattac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249604 |
ttgcaacgtggttgtattccttttcttgtatatatgtaccta--cactgtaaatttgctctgttctctatcttttgatgaaataatggacggtctattac |
41249701 |
T |
|
| Q |
301 |
tcagtaaaacatgtcaatatggcgaagacgtacaaattacatttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccgtagctttttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249702 |
tcagtaaaacatgtcaatatggcgaagacgtacaaattacatttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccgtagctttttg |
41249801 |
T |
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| Q |
401 |
tgtgtgcatataaaaaaccagttgaataatgtatatttcatgctatgcaa |
450 |
Q |
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| T |
41249802 |
tgtgtgcatatataaaaccagttgaataatgtatatttcatgctatgcaa |
41249851 |
T |
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