View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_15 (Length: 432)
Name: NF19924_low_15
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 16569250 - 16569668
Alignment:
| Q |
1 |
aaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16569250 |
aaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaattta--cctcat |
16569347 |
T |
|
| Q |
101 |
gataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16569348 |
gataagcaatatcatgaagtgagaagacagaataagcaatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttc |
16569447 |
T |
|
| Q |
201 |
tttactgcttccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataa |
300 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16569448 |
tttactgcttccattttctaaagcttccgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacatctataa |
16569547 |
T |
|
| Q |
301 |
ttgatgagggaaacaaagaagactatataactagtggagacaaagcacggataagcgagaaaaaacacagaaattagtttacattagcgtaaatagtaaa |
400 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16569548 |
ttgatgagggaaacaaagaagactttataactatttgagacaaagcacggataagcgagaaaaaacacagaaattagtttacattagcgtaaatagtaaa |
16569647 |
T |
|
| Q |
401 |
catgtacattttgacgttctt |
421 |
Q |
| |
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| T |
16569648 |
catgtacattttgacgttctt |
16569668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 16527751 - 16528127
Alignment:
| Q |
1 |
aaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16527751 |
aaagcaacatgagtagatgttttttacttctatatattaaaagatatgaacaattgaatgtaccatttttaatctcaatagttagaaattta--cctcat |
16527848 |
T |
|
| Q |
101 |
gataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttc |
200 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |
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| T |
16527849 |
gataagcaatatcatgaagtgagaagacacaataaactatgatagatgacattaaaggccaattcataaagaggttttcattctttcggactgtcttttc |
16527948 |
T |
|
| Q |
201 |
tttactgcttccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataa |
300 |
Q |
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||| ||||||||||||| |||||||| || ||| || |||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16527949 |
tttgttgcttccattttctaaagcttcggcgtcatctgtggactctttgttaccattgtgattgtgaagtgtttcctgcagatagtgtacacaactataa |
16528048 |
T |
|
| Q |
301 |
ttgatgagggaaacaaagaagactatataactagtggagacaaagcacggataagcgagaaaaaacacagaaattagtt |
379 |
Q |
| |
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| T |
16528049 |
ttgatgagggaaacagagacgattatatgaacagtggagacaaagcacggataagatagaaaaaacacagaaattagtt |
16528127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 16587954 - 16588250
Alignment:
| Q |
6 |
aacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacctcatgataa |
105 |
Q |
| |
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||||||| ||||||||||| |||| || |||| || |||||||||||||| |||||||||||||||||| | || ||||||||||| |||| || ||| |
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| T |
16587954 |
aacatgaatagatgtttttaacttatatgaattcaatgagatttacaattgcatgtaccatttttaatctaagtaattagaaattta--cctcttggtaa |
16588051 |
T |
|
| Q |
106 |
gcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttac |
205 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | |
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| T |
16588052 |
gcaatatcgtgaagtgagacgacacaataagcaatgatagatgacattaaaggccaattcaaaaagaggttttcattcttttgaactgtcttttctttgc |
16588151 |
T |
|
| Q |
206 |
tgcttccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgat |
305 |
Q |
| |
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||||||||||||| |||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||| | || ||||||||||||| |
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| T |
16588152 |
tgcttccattttctaaagcttcggcattacctttggactcttcgttaccattgtgattgtgaagtgtttcctgcggatagt-ttaataactataattgat |
16588250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 16519407 - 16519603
Alignment:
| Q |
93 |
tacctcatgataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggact |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||| |
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| T |
16519407 |
tacctcttgataagcaatatcatgaagtgagaagacacagtaagcaatgatagatgacataaagggccaattcatcaagaggttttcattcttttgaact |
16519506 |
T |
|
| Q |
193 |
gttctttcttt----ac-----tgcttccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgca |
280 |
Q |
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| ||||||| || ||||||||||||| | |||||| |||||| || |||| || |||||||||||| ||||||||||||||||||| |
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| T |
16519507 |
atcttttctttgtcaacctttttgcttccattttctatagcttcagcatcatctatggactcactgctaccattgtgcttgtgaagtgtttcctgca |
16519603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 9008970 - 9008905
Alignment:
| Q |
139 |
atgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttcttta |
204 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
9008970 |
atgatagatgacattaaaggccaattcctgaagagaatttcattcttttggactgtattttcttta |
9008905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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