View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19924_low_16 (Length: 402)
Name: NF19924_low_16
Description: NF19924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19924_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 7388520 - 7388133
Alignment:
| Q |
1 |
tatataaagacttgaatcatgtacatttttctacatccacacatttctaaaaacaatagtcaattttcaaacactcattttcaatggcatctttatcaag |
100 |
Q |
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| T |
7388520 |
tatataaagacttgaatcatgtacatttttccacatccacacatttctaaaaacaatagtcaattttcaaacactcattttcaatggcatctttatcaag |
7388421 |
T |
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| Q |
101 |
ttttgttgctttggtcattttagttgttggaggaatatttgttcatgagattgaagctattccaagaacattcttagtgtttggagattcacttgttgat |
200 |
Q |
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| T |
7388420 |
ttttgttgctttggtcattttagttgttggaggaatatttgttcatgagattgaagctattccaagaacattcttagtgtttggagattcacttgttgat |
7388321 |
T |
|
| Q |
201 |
aatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatcaaccatctcatagaccaactggtagattctcca |
300 |
Q |
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| T |
7388320 |
aatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatcaaccatctcatagaccaactggtagattctcca |
7388221 |
T |
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| Q |
301 |
atggttacaatattcctgatattatcagtaagtttaatttcatttcatatgtgttgatatatattgcaatattttgaatgaccctttg |
388 |
Q |
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| T |
7388220 |
atggttacaatattcctgatattatcagtaagtttaatttcatttcatatgtgttgatatatattgcaatattttgaatgaccctttg |
7388133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 1807247 - 1807392
Alignment:
| Q |
180 |
tttggagattcacttgttgataatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatcaaccatctcata |
279 |
Q |
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| T |
1807247 |
tttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattat---ccaactcgta |
1807343 |
T |
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| Q |
280 |
gaccaactggtagattctccaatggttacaatattcctgatattatcag |
328 |
Q |
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| T |
1807344 |
aaccaactggtcgtttttcaaatggcttcaatattcctgatcttatcag |
1807392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 48091432 - 48091528
Alignment:
| Q |
171 |
ttcttagtgtttggagattcacttgttgataatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatc |
267 |
Q |
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| T |
48091432 |
ttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
48091528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 48100340 - 48100495
Alignment:
| Q |
171 |
ttcttagtgtttggagattcacttgttgataatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatcaac |
270 |
Q |
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| T |
48100340 |
ttctttgtatttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattat---c |
48100436 |
T |
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| Q |
271 |
catctcatagaccaactggtagattctccaatggttacaatattcctgatattatcagt |
329 |
Q |
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| T |
48100437 |
cgaccggtaggccaaccggtcgattctccaatggtctcaatattcctgatcttatcagt |
48100495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 35355386 - 35355331
Alignment:
| Q |
171 |
ttcttagtgtttggagattcacttgttgataatggaaataacaattacttggctac |
226 |
Q |
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| T |
35355386 |
ttcttcgtgtttggagactcacttgttgataatggcaataacaattttttggctac |
35355331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 20759377 - 20759333
Alignment:
| Q |
177 |
gtgtttggagattcacttgttgataatggaaataacaattacttg |
221 |
Q |
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| T |
20759377 |
gtgtttggagactcacttgttgatgttggcaataacaattacttg |
20759333 |
T |
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